Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq144 127 4e-24 seq422 102 2e-16 >seq144 Length=115930 Score = 127 bits (140), Expect = 4e-24 Identities = 427/658 (65%), Gaps = 10/658 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 |||||| |||| |||| ||||| || | || || ||| ||||| ||| | | Sbjct 56185 AAACTCTCTCTCGATCTCGACGGCGTCGCAGACGATTGACTTCACGCGCTCCTCCGTCAG 56126 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || || ||||| | ||| || || || | ||| ||||||||||| Sbjct 56125 CTTCGTCCTCAAGAGCGTG---TAGAGGAGGCAAGCGAAATCGCAGTGTAAGCCTTCGTC 56069 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | |||| |||||| | ||||||||||| || | | || ||||| Sbjct 56068 TCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTCTTAAGCCA 56009 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || || || ||||| || || Sbjct 56008 GAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAAGCTACGAT 55949 Query 48280 CCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | || |||| | | | || ||| |||||| | | |||||| | ||| |||| Sbjct 55948 TCGTTCAGCGAAGGTTTGAGATCC-GTC---GATCCAAGTCATCGCCCACTGTGCTTTCT 55893 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 || || ||| || || || || || || |||||||| | | | ||| || Sbjct 55892 TCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGATGATCTCTCTCTTTGTTATCTT 55833 Query 48399 CAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCT 48458 | || ||| ||| || |||||||| || || | |||||| || ||||||| Sbjct 55832 TGATGTACGTATCGAGAAGGAGACTATACATCTCGGAATGAATATTCTCAATCGCGATCT 55773 Query 48459 GGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC- 48517 |||| |||||||| || | ||||| | || || || |||| ||||| | ||| Sbjct 55772 GGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGAACATCTGACATGAATC-GTGAAGCG 55714 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 |||||||| || || || ||||| || || ||||| || ||||| ||||| | ||| Sbjct 55713 AGATTCTCTAAAACGATACCGTCTGATGCGGCGAAGAAAGCGAGGACGTGTTTGATGAAG 55654 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 || || || || | | ||| | ||| | || |||||| || || |||||| Sbjct 55653 TGACGTTCACCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGATCGACTTCT 55594 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGT 48695 || | |||||||| || || ||||| || ||||| |||| || | || |||| Sbjct 55593 TCGGCGGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGATCTGTGGGTAGT 55536 >seq422 Length=101449 Score = 102 bits (112), Expect = 2e-16 Identities = 186/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||||||||| | |||||| || ||||| || || ||||| ||||| | ||||| Sbjct 44056 TACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCG 44115 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | | ||| || || | ||||| |||||||| || || || ||||| Sbjct 44116 GAGATCTGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGAT 44175 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT- 48603 || || |||||||| || || ||||| | ||| || || |||| || | | | | ||| Sbjct 44176 GCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTT 44235 Query 48604 --CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661 |||| | | |||| || || |||||||| | |||||||| || || Sbjct 44236 TCCCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCG 44295 Query 48662 GCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 |||||||||||||| ||||||| | ||||| Sbjct 44296 GCTTTTTTGTACATCTCCCATATCTGAGGATA 44327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931441859110400