Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq144 113 8e-20 >seq144 Length=115930 Score = 113 bits (124), Expect = 8e-20 Identities = 380/575 (66%), Gaps = 19/575 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||| ||||| || || || ||||||||||||||| | ||||| Sbjct 55547 ATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGGACCGCCGAAGAAGTCGATCTA 55606 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | | ||| ||||| ||| | |||| | | | || | || || |||| Sbjct 55607 TCACAAGAC--GGACGCGATTGGGAGAATCTAAACGACGGTGAACGTCACTTCATCAAAC 55664 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA-GA 25653 |||| | || ||||| || || || || ||||| || |||||||| || | || Sbjct 55665 ACGTCCTCGCTTTCTTCGCCGCATCAGACGGTATCGTTTTAGAGAATCTC-GCTTCACGA 55723 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || || | |||||| ||| ||||||||| |||||||| || || Sbjct 55724 TTCATGTCAGATGTTCAAGTCTCGGAGGCGC-GTGCTTTCTACGGATTCCAGATCGCGAT 55782 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771 || ||| | || || ||| ||||| ||||| ||| |||||||| | ||| | Sbjct 55783 TGAGAATATTCATTCCGAGATGTATAGTCTCCTTCTCGAT-ACGTACATCAAAGATAACA 55841 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||||||| || || | || || || ||| || || || || ||| || | Sbjct 55842 AAGAGAGAGATCATCTCTTCCGCGCGATTGAAACCATTCCTTGCGTCGCGAAGAAAGCAC 55901 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC-GAGCGGCTGGTAGCC 25890 |||||| |||| |||||| || | | | | | || || || || | ||||| Sbjct 55902 AGTGGGCGATGACTTGGATCGACGG----ATCTCAAACCTTCGCTGAACGAATCGTAGCT 55957 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 || ||| || || || ||||| ||| |||| || ||| ||||||||||||| || Sbjct 55958 TTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CCATCTTCTGGCTTAA 56016 Query 25950 GCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | | | | |||| |||||| || | ||| || ||||| | ||| | ||||| | Sbjct 56017 G-AAACGAGGACTCATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCGAGACGAAG 56075 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | | ||| | ||||| || ||||| ||||||||| Sbjct 56076 GCTTACACTGCGATTTCGCTTGCCTCCTCTACACG 56110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928754121526400