Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq504 102 8e-17 seq1269 91.5 2e-13 seq2524 86.0 6e-12 >seq504 Length=87311 Score = 102 bits (112), Expect = 8e-17 Identities = 359/532 (67%), Gaps = 59/532 (11%) Strand=Plus/Minus Query 10094 GGGGGACTCTGGGCTTT-TGTGGC-GCTCCACGGAGCCTTCGCTTTAATCGGCTTT--AT 10149 || || || |||||||| | |||| |||| |||| | ||||| ||||| || || || Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTC-ACGGCCCTTTCGCATTAATAGGTGTTTCAT 51372 Query 10150 GTTA-CG---CCAGTTTGAGCTGGCGAGATTAATTGG---AATCCG-ACCTTAC-AATGC 10200 |||| || | | ||||| || || | | || ||| || |||||| ||||| Sbjct 51371 GTTATCGGTTCAATTTTGAACTTGC----TCATCTGCCTCAATTCGCACCTTATTAATGC 51316 Query 10201 TATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCC---TCATCTATCCAC- 10256 ||||| || ||||| || ||||||||||| || ||| |||| | || ||||||| Sbjct 51315 AATCGCATTCTCTGGTCCAATTGCTGTTTT-GTTTCTGTCTTCCGAGTAATTTATCCACG 51257 Query 10257 -TCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTC 10315 | || || ||| || |||||||||||| | ||| | ||||| | || Sbjct 51256 TTAGGTCAATCTGGT--GTTCTTTGCGCCTATTTTTACCTATATTTCGATT-----CATC 51204 Query 10316 CTTCTCTTCCTCCAGGGC-TTTCATAATTGGACGCTCAATCCCTTCCATATGATGGG-AG 10373 ||| | || |||| ||| |||||||||||||| | || || || ||||||||||| || Sbjct 51203 CTTTTTTT--TCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAG 51146 Query 10374 TTGCTGGTATACTG--GGAGGGGCGCTCCTAT-CAGCAATCCACGGAGTCACT-GTAGAA 10429 | || ||| ||||| || | ||| || |||| | || || || || | ||| |||||| Sbjct 51145 TCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAA 51086 Query 10430 AACACACTTTATCAAGATGGCGAACAA-------GCAAACA---CTTTCAAAGCTTTTGA 10479 || || | | | ||||||| | | ||| | | || | |||||| | Sbjct 51085 AATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGCTTTTAA 51026 Query 10480 TAGCACTCAAGAAGAAGAGACCTA-TTCGATGGT-TACTGCT--AACCGTTTCTGGTCCC 10535 ||||||| ||||| || || ||| ||||| || ||| | ||| || ||||| | Sbjct 51025 CCCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTTGGTCAC 50966 Query 10536 AGATATTT--GGAATTGCTTTTAGCAA--TAAACGCTGGCTT--CATTTCTT 10581 | || ||| || ||||||| ||| |||||| |||||| |||||||| Sbjct 50965 AAATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTT 50914 >seq1269 Length=73620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 327/476 (69%), Gaps = 43/476 (9%) Strand=Plus/Minus Query 8805 TGCTGGTG-TCTTCGGCGGATCTCT-CTTTTCCGCAATGCATGGTTCACTCGTTA-CTTC 8861 || ||||| | ||||||| | || |||| || ||||||||||| | | || |||| Sbjct 6688 TGGTGGTGGTATTCGGCGCTGCCCTACTTTAGTGCTATGCATGGTTCCTTTGGTAACTTC 6629 Query 8862 TTCGCTGGTTC-GTGAGACCACCGAAACCGAGTCT-CAAAACTATGGCTA---CAAGTTC 8916 | || || | || ||||| |||| || ||| | || | || || || ||| Sbjct 6628 TAGTTTGTATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAAGGTTAGGCCAGATTC 6569 Query 8917 GGTC-AAGAAGAGGA-AACTTACAACATT-GTT--GCCGCTCATGGCTACTTT-GGTCGC 8970 |||| ||||||| || ||||||||||||| ||| || |||||||| || ||| || || Sbjct 6568 GGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGA 6509 Query 8971 TTGA--TCTTCCAATATGCATCTTTTAACAA----TTCTAGAAGCTTGCATTTCTTC-CT 9023 |||| ||||||||||||| ||| | ||| | || | || ||||||||| || Sbjct 6508 TTGACATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCT 6449 Query 9024 CG-CTGCGTGGCCTG-TGGT-GGGAATCTG-GTTTACC-GCCCTCGGCGTCTCGACC-AT 9077 | | || ||||| | | || ||| || || |||||| || | || | | | | || Sbjct 6448 AGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTAT 6389 Query 9078 GGCTTTCAACCTCAATGGCTTCAACTTCAACC-----AGTCCAT-TA-TCGACGGACAAG 9130 |||||||||||| ||||| ||||| ||||||| | || | || | || | |||| Sbjct 6388 GGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG-CAAG 6330 Query 9131 GACGAGT--GCTCAACACCTGGGCAGACGTACTTAACCG-CGCAGGACTCGGTATGGAAG 9187 |||| || | || || ||||| || | ||||||| | | | |||||||||| Sbjct 6329 GACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAG 6270 Query 9188 TCAT-GCACGAAAG-AAACGCAC--AC-AACTTCCCGCTTGACCTTGCGGCTGCTG 9238 | || ||| ||| | | |||| | || |||||||| || ||||| || |||| || Sbjct 6269 TTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq2524 Length=29166 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/141 (77%), Gaps = 7/141 (5%) Strand=Plus/Plus Query 8614 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTT-CTGCTGTATT 8672 ||||||||||| | ||| | |||||| |||| |||||| || ||| ||||||| || Sbjct 13567 ATGCGTCCTTGATTGGCTGT-GAATACTCAGCTC-TGTTGCAGC-GCTAACTGCTGTTTT 13623 Query 8673 CCTTGTCTATCCTTTTGGTCAAGGTTCGTTCT-CTGATGGTATGCCTCTTGGTATCTCCG 8731 | | ||||||| || ||||| || |||| | ||||||||||||||||| | | ||| | Sbjct 13624 CTTGATCTATCCATT-GGTCAGGGAACGTTTTTCTGATGGTATGCCTCTTAGGAACTCTG 13682 Query 8732 G-TACGTTCAACTATATGCTT 8751 | ||| ||||||| |||| || Sbjct 13683 GTTACTTTCAACTTTATGATT 13703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516429578640000