Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2666 107 2e-18 seq683 93.3 4e-14 seq308 93.3 4e-14 >seq2666 Length=20083 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || |||||||| ||| ||| || || Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | | || ||||| || || ||||||||| || | | | ||| ||| Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCACGACAAAGAAGGGATCCAAGCAGACCAA 9389 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || ||||| ||| | |||||| | | ||| | || || |||||| Sbjct 9388 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCAGACTATAAC 9329 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| ||||| || || ||| Sbjct 9328 ATCCAAAAGGAATCAACACTTCAC 9305 >seq683 Length=32930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||||||||| | || |||||||||||| | || ||||| || |||||||| ||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||| |||||||| ||||| ||||| | ||| |||| || Sbjct 24568 GATGGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTTG 24627 Query 28767 AGATTACGAGGAGGGA 28782 || | |||| |||| Sbjct 24628 AGGCTTAGAGGTGGGA 24643 >seq308 Length=205501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || || |||||||||||| ||| || || Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || || | | || | || || || | || ||||| || ||| | || || || Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAA-GACAAGGAAGGAATCCCTCCGGACCA 131273 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| |||||||| || ||||| | || ||| | ||| | |||||||| || Sbjct 131272 ACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAA 131213 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || |||||||| || || || |||| Sbjct 131212 CATCCAGAAAGAATCAACCCTTCATTTGGT 131183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425364308109990