Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1269 113 5e-20 seq317 102 9e-17 seq2524 82.4 8e-11 >seq1269 Length=73620 Score = 113 bits (124), Expect = 5e-20 Identities = 312/449 (69%), Gaps = 41/449 (9%) Strand=Plus/Minus Query 161458 TTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGT-TC-GTGAAACCACCGAAA 161515 || ||||| ||||| ||||| | | || || | | | || || | |||||||| |||| Sbjct 6661 TTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAA 6602 Query 161516 ACGAGTCCCAGAACT-ATGGTTA---CAAGTTCGGTC-AAGAAGAAGAGACCT-ACAACA 161569 | || || || | ||||| || ||||||| |||||||||||| || |||||| Sbjct 6601 ATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACA 6542 Query 161570 TC-GTT--GCTGCCCACGGGTACTTC-GGTCGTCTGA--TTTTCCAATACGCT---TCCT 161620 | ||| ||||| || || || || || || ||| | |||||||| ||| | | Sbjct 6541 TTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCA 6482 Query 161621 TCAACAACTCC-CGCTCGCTGCACTTCTTCCTT--GCTGCTTGGCCTGTTGTT--GGCAT 161675 ||||||||||| || || | || |||||| | || |||||||| | | | || || Sbjct 6481 TCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTAT 6422 Query 161676 CTG-GTTCACT-GCACTGGGCGTAAGCACC-ATGGCATTCAACCTGAATGGTTTCAACTT 161732 || ||| ||| || | || || | | | ||||| |||||||| ||||||||||| || Sbjct 6421 TTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTT 6362 Query 161733 CAACC-----AGTC--TATCGTTGATAGTCAGGGTAAAGTTA--TCAACACCTGGGCAGA 161783 ||||| | || | | |||||||| || || |||| | || || ||||| || Sbjct 6361 CAACCCCCCAAATCAGTGTAGTTGATAG-CAAGGACGTGTTAATTGAATACTTGGGCTGA 6303 Query 161784 CGTTCTCAACCGTGCTGGTCTT-GGCATGGAAGTGAT-GCACGAGCGCA-ATGCTC--AC 161838 || | ||||||| | ||| || |||||||| || ||| || || | | |||| || Sbjct 6302 TATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAAC 6243 Query 161839 -AACTTCCCTCTTGACCTTGCTGCTGCTG 161866 |||||||| || ||||| ||||||| || Sbjct 6242 GAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq317 Length=114279 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||||||||| ||| ||| |||| ||||||||||||||||| || | || | ||| Sbjct 8582 GTGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTA 8641 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| || | ||||| || ||| | | ||||| || || || Sbjct 8642 CTCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGA 8701 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 158504 || |||||| ||||| || ||||| || || | | || | |||| ||||| Sbjct 8702 TCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCACTTG 8761 Query 158505 TGTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 || |||||||||| |||| ||| ||| ||| || | ||||| || Sbjct 8762 TGCGGCTTATCCTACTTCTGATGTTGTCATTAGAACTCACCAAGAAGAAGA 8812 >seq2524 Length=29166 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/204 (72%), Gaps = 23/204 (11%) Strand=Plus/Plus Query 161232 CCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCG-- 161289 |||||||| |||||||||| |||| || | |||||| ||| |||| ||||||| Sbjct 13557 CCGTCTGGTGATGCGTCCTT-GATTGGCTGTGAATACTCAGCT-CTGT---TGCAGCGCT 13611 Query 161290 -AGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTC-TTTCTCTGATGCAATGCCTC 161347 | ||| || ||| || ||||||| || ||||| || | ||| ||||||| ||||||| Sbjct 13612 AACTGCTGTTTTCTTGATCTATCCATT-GGTCAGGGAACGTTTTTCTGATGGTATGCCTC 13670 Query 161348 TGGGCATCTCTGG-TACGTTCAACTACATG----CTTGTCTTCCAAGC-----AGAGCAC 161397 | | | |||||| ||| ||||||| ||| || | |||| ||| |||||| Sbjct 13671 TTAGGAACTCTGGTTACTTTCAACTTTATGATTTGTTATTTTCCTAGCTTCCAGGAGCAC 13730 Query 161398 AACA--TTCTCATG-CACCCCTTC 161418 |||| |||| ||| ||||| ||| Sbjct 13731 AACATGTTCTTATGTCACCCATTC 13754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547693726179600