Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1269 87.8 5e-13 >seq1269 Length=73620 Score = 87.8 bits (96), Expect = 5e-13 Identities = 237/345 (69%), Gaps = 32/345 (9%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTAT---GAGCAT-TACGCTCGTGC-ATAACTTCAA-AGCC 17887 ||||| ||||| |||||||| |||| | |||| || ||| |||||||| | | || Sbjct 6221 AGCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTCCATACCC 6280 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACG--ACTTGTCCT--CCAGCTG 17943 ||||||| | | ||| | | |||||||| ||| | || ||||| | | | Sbjct 6281 AAGGTTACCACGGTTAATAATATCAGCCCAAGTATTCAATTAACACGTCCTTGCTATCAA 6340 Query 17944 CTACAATGGATTGG----TTGAAGTTGAATCCATTGAGATTAAAAGCCATAG-TGGAGAT 17998 ||||| || |||| ||||| ||||| ||||| || || |||||||||| | | | Sbjct 6341 CTACACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGCTACATAA 6400 Query 17999 TCCCATAG-AGGTAAGCC---ATATGCAAGTGACGGGCCAAGCAGCCAAGA--AGAAATG 18052 || | || | |||| | ||| | | | |||||||||| ||| ||| ||||||| Sbjct 6401 ACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTAGAGAAGAAATG 6460 Query 18053 TAGACTCCT----GCTATTGTTAAAGCTAGCATACTGGAAGATG--AGTCTCCCAAAG-T 18105 || | | | | ||| | || |||||||| ||||||||| | || ||||| | Sbjct 6461 TAAAGAACGAGGAGTTGTTGATGAAACTAGCATATTGGAAGATGTCAATCGGCCAAAAAT 6520 Query 18106 AGCCATGAGCCGC--AACAA-TATTATACGT-CTCTTCTTCTTGG 18146 | |||||||| || ||||| | || || || ||||||||||||| Sbjct 6521 AACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTGG 6565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151304366164140