Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq317 105 8e-18 seq1129 91.5 2e-13 >seq317 Length=114279 Score = 105 bits (116), Expect = 8e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 102809 ACCACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCG 102868 || ||||| ||||| || || ||| | || || |||||| | ||| | | | || || Sbjct 8788 ACAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACATATCCTTCACCAATCTGTTCA 8729 Query 102869 TCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAA 102928 ||||| || || || || ||||| |||||||| || |||| ||||||||||| Sbjct 8728 TCATCAAGGAAACTCTGGTCAGACTGATCAACAGTACCAGACTCAACTTTACCAGCACAG 8669 Query 102929 GTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCG 102988 || || || | ||||||||| || || ||||||| |||| || ||||| ||||| ||| Sbjct 8668 GTTGAGCAAGAACCAGCACGGCATGAGTAAGGCAAGTCAATTCCAGCTTCCTCAGCTGCG 8609 Query 102989 TCTAGAATATATTGATCATCCTCACAGGTGATATCATGATCACCTTCGGATGT 103041 || || | || || || ||||| || || || || ||||| | ||| Sbjct 8608 TCGAGGACGTAAACGTCTTCTTCACACTCAATCTCTTGCTCTCCTTCAGGTGT 8556 >seq1129 Length=53819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 102823 TGGGTATGCCACGCAGGTCAGAACAAAACC-TGCTTCTAGTTGATCGTCATCCAGAAAGG 102881 |||||| ||||| || |||| ||| |||| | || | ||| | | || || ||||| | Sbjct 8912 TGGGTAAGCCACACAAGTCAAGACATAACCATTCTCCAAGTGGCTA-TCGTCGAGAAACG 8970 Query 102882 ATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCAC 102941 | ||| || || || | |||| ||||||||||||| ||||| |||||||||| Sbjct 8971 AACCATCCGACTGGTCAACGTTGCCCGTAACAATCTTACCAGCGCAAGTGGAACACGCAC 9030 Query 102942 CAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATT 103001 |||| | || || ||||| | ||||| ||||| || ||||| || || | || |||| Sbjct 9031 CAGCTCTGCAAGAGTAAGGTAACTCAACTCCTGCCTCTTCAGCTGCATCCAAGATGTATT 9090 Query 103002 GATCATC 103008 | || || Sbjct 9091 GGTCGTC 9097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633451753234800