Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1269 129 2e-25 >seq1269 Length=73620 Score = 129 bits (142), Expect = 2e-25 Identities = 250/344 (73%), Gaps = 34/344 (10%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTT-GT--GTGCGT-TCCGCTCATGC-ATCACCTCAA-AGCCA 21524 || ||||| || |||||||| || | |||| | || |||||| || || || | | ||| Sbjct 6222 GCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTCCATACCCA 6281 Query 21525 AGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGA--TCACCTGTCCATC--AGCAGC 21580 ||||| ||||||||| ||| |||||||| || || | | || |||| | | || | Sbjct 6282 AGGTTACCACGGTTAATAATATCAGCCCAAGTATTCAATTAACACGTCCTTGCTATCAAC 6341 Query 21581 TAGCAGAGATT-----GGTTAAAGTTGAAACCATTCAAGTTGAAAGCCAT-GGTAGACAC 21634 || || |||| |||| || ||||||||||| | |||||||||||| | || | | Sbjct 6342 TA-CACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGCTACATAA 6400 Query 21635 GCCAAGCGC-AGCAAAC-CAAATA-CCTAC-AACAGGCCAGGCAG-CAAGA-AAGAAATG 21688 || | || || |||| |||||| ||||| | | ||||| || | | ||| |||||||| Sbjct 6401 ACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTAGAGAAGAAATG 6460 Query 21689 AAGACTACG-GGAATTAT---TAAAGCTAGCATATTGGAAGAT---AAGCCGACCAAAAT 21741 | | ||| ||| || | | || ||||||||||||||||| || | | | ||||| Sbjct 6461 TAAAGAACGAGGAGTTGTTGATGAAACTAGCATATTGGAAGATGTCAATCGGCCAAAAAT 6520 Query 21742 AGCCGTGAGCAGC--AAC-AATATTGTAAG-TCTCTTCCTCTTG 21781 | || |||||||| ||| ||| ||||||| ||||||| ||||| Sbjct 6521 AACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTG 6564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146194440121800