Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq886 123 3e-23 seq397 120 4e-22 seq1269 87.8 2e-12 >seq886 Length=72608 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| |||||||||||||| ||||||| | | || ||||||| ||||||| || Sbjct 15278 CATTGCTTCTGCTGCTGCAGTGCCTTCATCAAGCAACGAAGCGTTTGACATTGGTAGACC 15337 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||| | |||||||||||| | || | ||| | |||||| || || || Sbjct 15338 AGTGAGATCAGTGATCACCGTTTGGTAATTAAGCAACGATTCGAGTCTTCCTTGTGAGAT 15397 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 |||||||||||| || ||||| || |||||| |||||||| | | || ||| Sbjct 15398 CTCAGCTTGATAAGGTGTGTATTGAGTATACCAAGCTGGATTCTCCATTATATTACGCAA 15457 Query 140039 TATGACTGGGGGT 140051 || ||||| ||| Sbjct 15458 AATCACTGGAGGT 15470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/207 (71%), Gaps = 16/207 (8%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || || ||||| || || |||||||| || | |||||| || |||||||| || Sbjct 14739 TGAGCGGTACAAATGTTGCTAGTAGCTTTGTCCCTGCGAATATGTTGTTCTCTAGTCTGC 14798 Query 139377 AGTGCTAATCTGTATGCAG-GATTGCCTTCGCTG-----TC--CACTGACTGACCTACAA 139428 | || | || ||| | |||| ||| | | || |||| || ||| | || Sbjct 14799 ATAGCCA-----TACGCAAAGCTTGC-TTCCCAGAAGAATCAACACTAAC--ACCAATAA 14850 Query 139429 TTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGAC 139488 | || ||||| ||| |||||||||||| | || || || || || ||||||||||||| Sbjct 14851 TCCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAAAAAGCAGCATGAGGAC 14910 Query 139489 CTCCGTATCCCATAGGAATACCAAACC 139515 | || || ||||| |||| |||||||| Sbjct 14911 CACCATAACCCATGGGAACACCAAACC 14937 >seq397 Length=240941 Score = 120 bits (132), Expect = 4e-22 Identities = 155/212 (73%), Gaps = 14/212 (7%) Strand=Plus/Minus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || |||||||| || || ||||| || |||||||| | Sbjct 233682 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTGTCCCTCCTTATATGTTGTTCTCTAGTCT 233623 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTG-----TCCACTGACTGA--CCTACA 139427 | | || | || |||| || ||| ||| || || ||| | || | | Sbjct 233622 GCATAGCCA-----TACGCAGAGCTGGCTTTCCTGAAGAATCAAC--ACTAATACCAATA 233570 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || ||||| ||| |||||||||||| | || || || ||||| |||||||||||| Sbjct 233569 ATCCTCCCAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAGAACGCAGCATGAGGA 233510 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 || ||||| ||||| |||| |||||||||||| Sbjct 233509 CCACCGTAACCCATTGGAACACCAAACCTTTG 233478 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| ||||||||| || || ||||| | || || | || Sbjct 233141 CATAGCCTCCGCAGCAGCAGTGCCTTCATCTAGAAGCGAGGCGTTAGACATAGGAAGCCC 233082 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || ||||| | ||| ||| |||||| | | ||| | | || ||||| || Sbjct 233081 AGTGAGGTCAGTGATCATCGTCTGGAAATTGAGCAGCGATTCAAGACGACCTTGAGAGAT 233022 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| |||||||| ||||||||| ||||||||| Sbjct 233021 CTCAGCTTGATAAGGAGTGTATTGAGTGTACCAAGCAGGATTCTC 232977 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | |||||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 235535 AAATGGTGCCAAATGTTTCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 235476 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 235475 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 235427 >seq1269 Length=73620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 247/354 (70%), Gaps = 38/354 (11%) Strand=Plus/Plus Query 124041 CAGCAGATGCTAGGTCTAGTGGGAAGTT-GT--GTGCATTT-CTTTCATGC-ATAACTTC 124095 || ||| |||||||||||||||||||| || | || | | | ||||||| |||||||| Sbjct 6214 CAACAGCAGCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTC 6273 Query 124096 CATACCCAAGTTTGCT-CTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGT--T 124152 |||||||||| || | | ||| | || |||| |||| || | ||| ||| | Sbjct 6274 CATACCCAAGGTTACCACGGTTAATAATATCAGCCCAAGTATTCA--ATTAACACGTCCT 6331 Query 124153 AGC-ATCAACAAC--TGATT-----GGTTAAAGTTGAAACCATTCAAGTTGAATGCCATT 124204 || |||||| || ||||| |||| || ||||||||||| | |||||| ||||| Sbjct 6332 TGCTATCAACTACACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATA 6391 Query 124205 G-TGCAGATACCCATAG-AGGTTAAC-CATACA-CATACAACAGGG--AAAACTGCTAG- 124257 | | || | ||| | || | || ||| || | | | ||| || ||| || | |||| Sbjct 6392 GCTACATAAACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTAGA 6451 Query 124258 GAAGAAGTGAAGACTTC-TTGAGTTGTTGAATGA----AGCATACTGGAAGAT---AAGA 124309 |||||| || | | | ||||||||| |||| |||||| |||||||| || Sbjct 6452 GAAGAAATGTAAAGAACGAGGAGTTGTTG-ATGAAACTAGCATATTGGAAGATGTCAATC 6510 Query 124310 CGACCAAAGTAACCGTGTGCTG-CTA--CTATGTTGTATGTT-TCTTCTTCTTG 124359 | | ||| ||||| || || | ||| |||||||| ||| ||||||||||| Sbjct 6511 GGCCAAAAATAACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTG 6564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578941875281200