Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq317 140 4e-28 seq86 125 1e-23 seq504 102 1e-16 seq1129 87.8 2e-12 seq1269 86.0 8e-12 >seq317 Length=114279 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | |||| ||| | |||||||||||| ||||| || |||||||||| ||| Sbjct 8809 TCTTCTTGGTGAGTTCTAATGACAACATCAGAAGTAGGATAAGCCGCACAAGTGAGAACA 8750 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | ||||| |||| || |||||||| | ||| ||| ||| || || || |||||| Sbjct 8749 TATCCTTCACCAATCTGTTCATCATCAAGGAAACTCTGGTCAGACTGATCAACAGTACCA 8690 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || ||| ||||| ||||| | ||| || | ||| ||||| || ||||| || ||| Sbjct 8689 GACTCAACTTTACCAGCACAGGTTGAGCAAGAACCAGCACGGCATGAGTAAGGCAAGTCA 8630 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | ||| ||||||| ||||| || |||| ||| Sbjct 8629 ATTCCAGCTTCCTCAGCTGCGTCGAGGACGTA 8598 >seq86 Length=255091 Score = 125 bits (138), Expect = 1e-23 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 46986 GCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGGTTTGTA 47045 || ||||| ||||| ||| | || ||| ||||| |||||| | ||||| || ||||| Sbjct 209072 GCAGGAAGCACATGAGAATTCTCCGGGTGGAAATTGTCATTTTGGCCATACAGATTTGTG 209131 Query 47046 GGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATCTTGATA 47105 ||||| ||||| |||| || || ||| |||| || ||||||||||| || Sbjct 209132 GGCATACCGGAGATGGCATCCCATTGATGCTGAATCCGGTAAGCTTGACACATCTTAATG 209191 Query 47106 CCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTCATTAGA 47165 ||||||||||| || || || || | ||||| | |||||||| |||||| | | ||| Sbjct 209192 CCAGCAATCTTAGCGATTGCGTACCATTCATTTGTCGGTTCAAGCGGACCAGTGAGAAGA 209251 Query 47166 TATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCAAGAAAT 47225 ||| ||||| || | ||||| || |||||||| |||||||| || || Sbjct 209252 GCGGATTCAGGTATAGGCTGAGGAGCAAATTTGGGGTAAATGCAAGAAGAACCGAGGAAG 209311 Query 47226 AAAAGTTTCTTAACACC 47242 | ||||||||||| || Sbjct 209312 AGGAGTTTCTTAACGCC 209328 >seq504 Length=87311 Score = 102 bits (112), Expect = 1e-16 Identities = 245/351 (70%), Gaps = 36/351 (10%) Strand=Plus/Plus Query 23769 CCATCTTCATACAGTGTATTCTCGAC-AGTAACTCCATGAATAGCAG-AGAGAAGTGCTC 23826 ||||||||| | | ||||| || || |||| | ||||||||||| | | || || || Sbjct 51066 CCATCTTCAAATAAAGTATTTTCTACCAGTAGCACCATGAATAGCCGCATAGCAGAGCCG 51125 Query 23827 CTCC--CAGTATACCAGCAACT-CCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAA 23883 | || ||||| ||| || ||| ||||||||||| || ||||| | ||||| ||||||| Sbjct 51126 CGCCGCCAGTACACCGGCGACTTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAA 51185 Query 23884 A-GCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCG---AAACTCGGCGCA 23939 | ||| |||| || | ||||| |||| || || | | ||| | |||||| Sbjct 51186 ACGCCTTGGA--AAAAAAAGGA---TGAA-----TCGAAATATAGGTAAAAATAGGCGCA 51235 Query 23940 AAGAAC-CAAGATGACTGTCCCAA--AGGATAGATGA---GGAATACAGACACGAATACA 23993 |||||| | |||| || || || ||||| || | |||| ||||| || || ||| Sbjct 51236 AAGAACACCAGAT---TGACCTAACGTGGATAAATTACTCGGAAGACAGAAAC-AAAACA 51291 Query 23994 GCAATAGGACCAGAAAAAGCAATCGCATT-GTAGGGACGGATTCCAATTAGACGTGCCAG 24052 ||||| |||||||| || || || ||||| || || || | | ||| | || || Sbjct 51292 GCAATTGGACCAGAGAATGCGATTGCATTAATAAGGTGCGAATTGAGGCAGATGAGCAAG 51351 Query 24053 TTC-AAACTGA--CG-TAACAT--AAAACCTATAAGTGCAAAGGCACCGTG 24097 ||| ||| ||| || |||||| || |||||| | ||| || | ||||| Sbjct 51352 TTCAAAATTGAACCGATAACATGAAACACCTATTAATGCGAAAGGGCCGTG 51402 >seq1129 Length=53819 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 32648 TCAGAAGTTGGATATGCAACACAAGTGAGCACA-AACCCTTCTTCAATTTGATCATCATC 32706 ||||| ||| || || |||||||| | ||| |||| |||| ||| | | | ||| || Sbjct 8904 TCAGACTGTGGGTAAGCCACACAAGTCAAGACATAACCATTCTCCAAGTGGCT-ATCGTC 8962 Query 32707 CAAGAACGACTGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGA 32766 | ||||| ||| ||||| || | || | ||||||||||| || |||| || Sbjct 8963 GAGAAACGAACCATCCGACTGGTCAACGTTGCCCGTAACAATCTTACCAGCGCAAGTGGA 9022 Query 32767 ACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAG 32826 ||| ||||| || | |||||||| ||| ||||| || | || || |||||||| | Sbjct 9023 ACACGCACCAGCTCTGCAAGAGTAAGGTAACTCAACTCCTGCCTCTTCAGCTGCATCCAA 9082 Query 32827 GATGTATTGATCATC 32841 ||||||||| || || Sbjct 9083 GATGTATTGGTCGTC 9097 >seq1269 Length=73620 Score = 86.0 bits (94), Expect = 8e-12 Identities = 157/214 (73%), Gaps = 21/214 (10%) Strand=Plus/Plus Query 26857 TTGAAGTTGAAACCGTTGAGATTGAAAGCCATCG-TGGATACACCAAGTGC-GGTGAAC- 26913 ||||| |||||||| || || ||||||||||| | | ||| ||| | || || ||| Sbjct 6359 TTGAAATTGAAACCATTTAGGTTGAAAGCCATAGCTACATAAACCTAAAGCAAGTAAACA 6418 Query 26914 CAGATGCC--AACAACGGGCCATGCAGC--AAGGAAGAAGTGCAAGGAACG-TGAGTTGT 26968 || || || | | ||||||| || || | |||||| || || ||||| ||||||| Sbjct 6419 CAAATACCCTACTACCGGGCCAAGCCGCCTAGAGAAGAAATGTAAAGAACGAGGAGTTGT 6478 Query 26969 TGAATGA----AGCATATTGGAAGA--TCAAACGACC-GAAGTAGCCATGTGCTGC--GA 27019 || |||| |||||||||||||| |||| || || || || ||||| || || | Sbjct 6479 TG-ATGAAACTAGCATATTGGAAGATGTCAATCGGCCAAAAATAACCATGAGCAGCCTAA 6537 Query 27020 C-GATGTTGT-AGGTCTCTTCTTCTT-GACCGAA 27050 | ||||||| || |||||||||||| ||||||| Sbjct 6538 CAAATGTTGTAAGTTCTCTTCTTCTTGGACCGAA 6571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665429431109200