Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3342 145 9e-30 seq278 141 1e-28 seq236 136 5e-27 seq4792 107 2e-18 seq330 104 3e-17 seq422 102 1e-16 seq510 89.7 6e-13 seq144 82.4 9e-11 >seq3342 Length=29012 Score = 145 bits (160), Expect = 9e-30 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| | || ||||| | | || ||||||| ||||||| ||| Sbjct 14271 GTTGAGTTTCTGAAGAAGCCTGAGAGGTTTACTGCGGTTGGTGCCCGGATCCCCAAAGGT 14212 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || |||||| | || |||||| || ||| Sbjct 14211 GTTCTCCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTCTTGGCAAAAGCCATTGCTGGT 14152 Query 175357 GAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||| | ||| || ||| | ||| ||||| | | ||||| ||||||||||| | Sbjct 14151 GAAGCCGGTGTACCCTTCTTTTCCAT--CTCTGGTTCTGAGTTTGTTGAGATGTTTGTCG 14094 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| |||||| || ||||| || ||| ||| |||||| || || | Sbjct 14093 GTGTTGGTGCCTCAAGGGTCCGAGATCTTTTCAAAAAGGCCAAAGAAAATGCTCCGTGCA 14034 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 |||| || | ||||| || ||||| || || | |||| | | |||| |||| Sbjct 14033 TTGTTTTTGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACTGGAATTGGT---G 13977 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| ||| ||||||| || || || ||||||||||| |||| Sbjct 13976 GAGGTAATGATGAAAGAGAACAGACACTTAATCAGCTCCTGACTGAGATGGATGGTTTTG 13917 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACG 175651 | | | ||||| || | || |||| || || || | | || || ||||| || Sbjct 13916 AGGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCG 13857 Query 175652 CCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | | || | || || || ||||| || Sbjct 13856 CTTTGCTAAGACCAGGGCGGTTTGACCG 13829 >seq278 Length=108333 Score = 141 bits (156), Expect = 1e-28 Identities = 280/413 (68%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| | |||||||||| || ||||||||||||||| ||| Sbjct 38629 GTTGAGTTTCTGAAGAAGCCCGAGAGATTCACTGCTGTTGGTGCCAAGATCCCGAAAGGT 38688 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || ||| || ||||| || || ||||| | || ||||||||| ||| Sbjct 38689 GTTCTCCTTATTGGTCCTCCTGGTACAGGGAAAACCCTTTTGGCAAAAGCCATCGCTGGT 38748 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||||||| Sbjct 38749 GAAGCTGGTGTTCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 38808 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| || || |||||||| || | | ||| || ||| || || ||| Sbjct 38809 GTTGGTGCCTCGAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAGAATGCTCCTTGCATT 38868 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || ||||| || || | |||| | | | || |||| | Sbjct 38869 GTCTTTGTAGATGAAATAGATGCTGTTGGTAGGCAAAGAGGAACCGGGATTGGT---GGA 38925 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||| || |||||||| || ||||||| || || || ||||||||||| ||||| Sbjct 38926 GGTAATGATGAAAGAGAACAGACCCTTAATCAGCTCCTAACTGAGATGGATGGTTTTGAA 38985 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | ||||| || | || |||| ||||| || | | || || ||||| Sbjct 38986 GGTAACACTGGTGTTATCGTAGTTGCTGCCACCAACAGAGCAGACATTCTTGA 39038 >seq236 Length=170583 Score = 136 bits (150), Expect = 5e-27 Identities = 201/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| |||||||| ||||||||| | || |||| | || || ||| || || ||||| Sbjct 103454 GCCTGGTACGGGTAAGACCCTCTTGGCTAGAGCAGTGGCTGGAGAAGCAGGAGTACCATT 103513 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || ||| | || || | ||||| ||| | ||||| ||||| ||||| || || Sbjct 103514 CTTCTCCTGCGCGGCTTCAGAGTTTGTTGAGCTTTTTGTGGGTGTTGGTGCATCTAGAGT 103573 Query 175434 TCGCGATCTCTTTGAAATCGCCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | ||||| | || |||||| || || ||||| |||||||||||| Sbjct 103574 TAGAGATTTGTTTGAGAAGGCTAAGGCGAAAGCT--CCTTGCATTGTATTCATTGATGAG 103631 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||| ||||| | ||| | | ||||| ||| | | || |||||| ||||||| Sbjct 103632 ATTGATGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGG--AGGAAATGATGAGAGAG 103689 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 |||| || |||||||| | | || ||||||||||| ||| Sbjct 103690 AACAGACCATTAATCAGTTGTTGACTGAGATGGATGGATTT 103730 >seq4792 Length=4203 Score = 107 bits (118), Expect = 2e-18 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || || || || | || |||| |||| || ||| | || || ||| Sbjct 1606 CCGGGTACAGGGAAAACGCTTTTGGCTAGAGCTGTCGCTGGAGAAGCGGGAGTACCGTTC 1547 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| |||| | | ||||| ||| | ||||||||||| ||||| || ||| Sbjct 1546 TTTTCGTGTGCTGCTTCTGAGTTTGTTGAGCTTTTTGTTGGTGTTGGTGCTTCTAGAGTT 1487 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 1486 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCT-CCTTGTATTGTGTTTATTGATGAGAT 1428 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| ||||| | |||| | | ||||| ||| | | | ||||| ||||| ||| Sbjct 1427 TGATGCTGTGGGGAGGCAAAGAGGAGCTGGAATGGGAGGT--GGTAATGATGAGAGGGAA 1370 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| |||||||| || | || ||||||||||| ||| Sbjct 1369 CAAACGATTAATCAGCTTTTGACTGAGATGGATGGATTT 1331 >seq330 Length=201778 Score = 104 bits (114), Expect = 3e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816 || |||||||| || ||| || | | || |||||||||||| |||||||| |||| Sbjct 20861 ACTGTGTGGGAGATTAAGCAGAGAAAAGTGGTTGACATGGCCGTTGATCGTGGATGCTTT 20920 Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGA-AAGTCCAACGATGTCCAAGCTCTC 76875 || |||||||| |||||| ||||| || |||||| || ||||| || | |||||| | Sbjct 20921 ATAGATCAAAGCCAAAGTTTGAATATACACATGGACAAACCCAACTTTG-CAAAGCTCAC 20979 Query 76876 TTCTATGCATATGTACGCGTGGAAACAGG 76904 |||| |||| | ||||| |||||| ||| Sbjct 20980 TTCTTTGCACTTCTACGCTTGGAAAAAGG 21008 >seq422 Length=101449 Score = 102 bits (112), Expect = 1e-16 Identities = 140/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||| || ||||||| ||||||||| | ||| | |||| |||||| || || Sbjct 43971 GAAGAAAGCACAATGGGCGATGAAATGGATCGACGGA---TCTCAAAGCTTCGCTGAACG 43915 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | || ||||| || || || ||||||||||||||||| || || |||||| Sbjct 43914 AATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCTATTTT 43855 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||||||||||| || ||| | ||||| || || ||||| || ||||| || || | Sbjct 43854 CTGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAACGAACTGATCTCAAG 43795 Query 65202 AGATGAGGGTCTCCA 65216 ||| || ||||| || Sbjct 43794 AGACGAAGGTCTTCA 43780 >seq510 Length=119360 Score = 89.7 bits (98), Expect = 6e-13 Identities = 262/395 (66%), Gaps = 19/395 (5%) Strand=Plus/Plus Query 177564 AAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTT 177622 ||||| |||| |||| ||||| ||| | || || || || || ||||| | | || | Sbjct 35530 AAACT-CCTCGACAGTGTGTGATTCCTCAGTTGCTACGACGTAGTCATCTGGTTTCTCCT 35588 Query 177623 GTTGAAGCATGAGCCACATGGCTTCAACATAGTC--CTTGGCATGACCCCAGTCTCTGGC 177680 | || ||||| |||||||| || || || ||||| || | || ||||||||||| | Sbjct 35589 GCTGGAGCATCAGCCACATTGCCTCCACGTAGTCTCCTGCGAAT--CCCCAGTCTCTTGA 35646 Query 177681 AGCGTTGAGGTTACCGAGTTCAAGGAAC-TCTC---TCTCACCTTTCACAATTTGTTTGA 177736 ||| | | || || || || | ||| || |||||| || | | Sbjct 35647 AGCCTGTATATTTCCCAGGAAGAGCTTCGTCTGCAATCCCACCTTG----ATCCTTCCCA 35702 Query 177737 CGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGA 177796 | | ||| || ||| |||||||||| | ||||| | ||||| |||||||||| Sbjct 35703 AGGCCCGAGTTATTTTCCGAGTGACAAAGTTCTCTCCTCGGCGGGGTGACTCGTGGTTGA 35762 Query 177797 AGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGT 177856 | ||||| ||| ||| || |||| ||| |||| ||||| ||||| | | ||||| Sbjct 35763 ACAGGATCCCGTTGCAAGCGTACAGACCGTAGGCCTCTCGATAATTGACGGTGTACCAGT 35822 Query 177857 GAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTT 177916 |||| || ||||||| | |||| |||| ||| | || |||||| ||| | | Sbjct 35823 GAGCCGCACATTTGGACGCTGCATAAGGAGATCTTGGATGAAACGGTGTCGTCTCCGACT 35882 Query 177917 GTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGA 177950 | |||| ||| || | || ||||||||||| Sbjct 35883 GCGGAG----GAGGAGTTGACCCGAACATCTCCGA 35913 >seq144 Length=115930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||| || | ||||| |||| ||| | ||| | |||| ||||||| || || Sbjct 55891 GAAGAAAGCACAGTGGGCGATGACTTGGATCGACGGA---TCTCAAACCTTCGCTGAACG 55947 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 | | || || || || || || ||||||||||||||||| |||||| | || | Sbjct 55948 AATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCCATCTT 56007 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | ||||| || || |||||||| || || |||||| || ||| | || || || Sbjct 56008 CTGGCTTAAGAAACGAGGACTCATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCG 56067 Query 65202 AGATGAGGG 65210 ||| || || Sbjct 56068 AGACGAAGG 56076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596511359892800