Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1269 129 7e-25 seq504 96.9 4e-15 >seq1269 Length=73620 Score = 129 bits (142), Expect = 7e-25 Identities = 317/450 (70%), Gaps = 43/450 (10%) Strand=Plus/Minus Query 166351 TTTAGTGCTATGCACGGAAG-TTTGGTTACTTCTTCTCTCGTT-AGAGAGACGACTGAAA 166408 |||||||||||||| || |||||| |||||| | | | || || || || |||| Sbjct 6661 TTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAA 6602 Query 166409 CCGAATCC-CAAAACTACGGTTA---CAAGTTCGGAC-AAGAAGAAGA-AACATACAACA 166462 ||||| | || | ||||| || ||||| | |||||||||| ||| ||||||| Sbjct 6601 ATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACA 6542 Query 166463 TCG--TAGCC-GCTCATGGTTACTTC-GGTCGTTTGA--TCTTCCAATACGCT----TCA 166512 | ||| | ||||||||||| || || || |||| |||||||||| ||| ||| Sbjct 6541 TTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCA 6482 Query 166513 TTCAACAACTCC-CGCTCCTTGCACTTCTTCCTT--GCTGCATGGCCTGTT-GTCGGC-A 166567 | |||||||||| || || || || |||||| | || || ||||| | | || || | Sbjct 6481 T-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTA 6423 Query 166568 TCTG-GTTCACCGCCCTT-GGCGTCTCCA-CGATGGCATTCAACCTGAACGGTTTCAACT 166624 | || ||| || | || || | | | | ||||| |||||||| || |||||||| | Sbjct 6422 TTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATT 6363 Query 166625 TCAACCAGTCCATCC-------TTGATGGTCAGGGTCGTGTG--TTGAACACCTGGGCAG 166675 |||||| | | | ||||| | || || ||||| ||||| || ||||| | Sbjct 6362 TCAACCCCCCAAATCAGTGTAGTTGATAG-CAAGGACGTGTTAATTGAATACTTGGGCTG 6304 Query 166676 ATGTTCTTAACCGCGCTGGTCTCGG-TATGGAAGTTAT-GCATGAGCGTA-ACGCAC--A 166730 || || ||||||| | | || || |||||||||||| |||||| |||| |||| | | Sbjct 6303 ATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAA 6244 Query 166731 C-AACTTCCCCCTCGACCTCGCTGCTGCTG 166759 | |||||||| || ||||| ||||||| || Sbjct 6243 CGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq504 Length=87311 Score = 96.9 bits (106), Expect = 4e-15 Identities = 263/379 (69%), Gaps = 33/379 (9%) Strand=Plus/Minus Query 167293 gggggACTCTGGGCTTT-TGTGGC-GCTCCACGGAGCCTTTGCTCTCATTGGT--TTCAT 167348 || || || |||||||| | |||| |||| |||| | || || | || ||| ||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTC-ACGGCCCTTTCGCATTAATAGGTGTTTCAT 51372 Query 167349 GCT-TCGAC---AGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTAC-AATGCTATT 167403 | | ||| | ||||||||||||| ||| | || || || ||||| || Sbjct 51371 GTTATCGGTTCAATTTTGAACTTGCTCATCTGCCTCAATTCGCACCTTATTAATGCAATC 51312 Query 167404 GCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCC---TTCTCTATCCCC--TCG 167458 || ||||||||||| |||||||| || ||| || |||| | | ||||| | | | Sbjct 51311 GCATTCTCTGGTCCAATTGCTGTTTT-GTTTCTGTCTTCCGAGTAATTTATCCACGTTAG 51253 Query 167459 GTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCC 167518 ||||| | | || |||||||| || | || | || || || |||||| ||| Sbjct 51252 GTCAAT-CTGGTG-TTCTTTGCGCC-TATTT-----TTACCT--ATATTTCGATTCATCC 51203 Query 167519 TCTTCCT-CCAAGGA-TTCCACAACTGGACACTGAATCCATTTCATATGATGGG-TGTAG 167575 | || | |||||| || || || |||||| |||| ||||||||||||||||| || | Sbjct 51202 TTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGTCG 51143 Query 167576 CAGGTATCCTG--GGTGGTGCATTGCT-TTCTGCAATCCATGGTGTTAC-AGTAGAGAAT 167631 | ||| | ||| || | || |||| | | || || ||||||| ||| ||||| ||| Sbjct 51142 CCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAAAT 51083 Query 167632 ACTTTGTATGAAGATGGTG 167650 ||||| | ||||||||||| Sbjct 51082 ACTTTATTTGAAGATGGTG 51064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561193208164000