Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1269 129 2e-25 >seq1269 Length=73620 Score = 129 bits (142), Expect = 2e-25 Identities = 250/344 (73%), Gaps = 34/344 (10%) Strand=Plus/Minus Query 41906 CAAGAGGAAGAGA-CTTACAATATT-GTT--GCTGCTCACGGCTATTTTGGTCGGCTT-- 41959 ||||| ||||||| ||||||| ||| ||| |||||||| || |||||| | | | || Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 41960 -ATCTTCCAATATGCTAGCTTTA---ATAATTCC-CGTAGTCTTCATTTCTT-TCTTG-C 42012 ||||||||||||||||| || | | || ||| ||| | | |||||||| ||| | | Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 42013 TGCCTGGCCTGTT-GTAGG-TATTTG-GTTTGCT-GCGCTTGGCGTGTCTACC-ATGGCT 42067 || ||||| | | ||||| |||||| |||| || || | || | | || | |||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 42068 TTCAACTTGAATGGTTTCAACTTTAACC-----AATCTCTGCTAGCTGCT--GATGGACA 42120 |||||| | ||||||||||| || |||| |||| || ||| || | | |||| Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTG-TAGTTGATAGCAAGGACG 6326 Query 42121 GGTGA--TCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCT-TTGAGGTGAT 42177 || | | || || |||||||| ||| ||||||||| |||||||| | | || || || Sbjct 6325 TGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTAT 6266 Query 42178 -GCATGAGCGGA-ACGCAC--AC-AACTTCCCGCTTGACCTTGC 42216 |||||| || | |||| | || |||||||| || ||||| || Sbjct 6265 GGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGC 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146200839528240