Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1269 105 2e-18 seq25 87.8 5e-13 >seq1269 Length=73620 Score = 105 bits (116), Expect = 2e-18 Identities = 212/295 (72%), Gaps = 31/295 (11%) Strand=Plus/Minus Query 42955 TTCGGTC-AAGAGGAGGAGA-CTTATAACATT-GTT--GCAGCGCATGGTTACTTTGGAC 43009 ||||||| |||| || |||| |||| |||||| ||| || || |||||||| ||| | | Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 43010 GGCTT---ATCTTCCAATATGCGTCGTTTAATAA-----TAGTCGCTCTTTGCACTTCTT 43061 | || |||||||||||||| | |||| || | | ||| ||||| || ||||| Sbjct 6511 CGATTGACATCTTCCAATATGC-TAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTT 6453 Query 43062 -TCTTGCCG-CTTGGCCCGTT-GTGGGG-ATTTG-GTTCACTT-CTCTTGGCGTCAGTA- 43114 ||| | || ||||||||| | || ||| ||||| ||| |||| || | || | ||| Sbjct 6452 CTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAG 6393 Query 43115 CTATGGCGTTTAACTTGAATGGTTTTAACTTTAACC-----AATCACTT--GTTGATAAT 43167 ||||||| || ||| | |||||||| || || |||| ||||| | ||||||| Sbjct 6392 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGC 6333 Query 43168 CAGAATCATGTCA--TCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGG 43220 || | | ||| | | |||||||||||||||| | || |||| |||||||| Sbjct 6332 AAGGA-CGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGG 6279 >seq25 Length=160953 Score = 87.8 bits (96), Expect = 5e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 42406 CCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAAC 42465 ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 127013 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 127072 Query 42466 AACATCATCTCTGGTGCC 42483 || || || || |||||| Sbjct 127073 AATATTATTTCAGGTGCC 127090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143519488229880