Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1269 123 3e-23 >seq1269 Length=73620 Score = 123 bits (136), Expect = 3e-23 Identities = 330/470 (70%), Gaps = 46/470 (10%) Strand=Plus/Plus Query 67354 CAGCAGCAGCAAGGTCAAGAGGGAAGTT-GT--GAGCGT-TACGCTCGTGC-ATAACTTC 67408 || ||||||| ||||| || |||||||| || |||||| |||| || ||| |||||||| Sbjct 6214 CAACAGCAGCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTC 6273 Query 67409 CATTCC-AAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCA---C 67464 ||| || ||| | | ||||| || || ||||||||| ||| || || | Sbjct 6274 CATACCCAAGGTTACCACGGTTAATAATATCAGCCCAAGTAT---TCAATTAACACGTCC 6330 Query 67465 CTGCG-TCAACGACG--GATT-----GGTTGAAGTTGAAACCGTTGAGGTTGAATGCCAT 67516 ||| ||||| || |||| ||||||| |||||||| || |||||||| ||||| Sbjct 6331 TTGCTATCAACTACACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCAT 6390 Query 67517 AGTTG-ACACACCCATTGCA-GTGAAC-CAGATGCAG-ACCACAGGGA-ATGCAGCA-AG 67570 || | | | ||| | ||| || ||| || || | || || ||| | || || || Sbjct 6391 AGCTACATAAACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTAG 6450 Query 67571 -GAAGAAGTGAAGACTTCTTG-AGTTGTTGA---AAGATGCATACTGGAAGAT--CAAGC 67623 |||||| || | | | | ||||||||| || ||||| |||||||| ||| | Sbjct 6451 AGAAGAAATGTAAAGAACGAGGAGTTGTTGATGAAACTAGCATATTGGAAGATGTCAATC 6510 Query 67624 GACCGAAG-TATCCATGAGCAGC--AACAA-TGTTGTAAGT-CTCTTCTTCTTGT-CCGA 67677 | || || || ||||||||||| ||||| |||||||||| |||||||||||| |||| Sbjct 6511 GGCCAAAAATAACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTGGACCGA 6570 Query 67678 ACTTG---TAACCGTAGTTCTGT-GACTCTTGCTCAGTAGTTTCTCTGATA-AGAGAAGA 67732 | || ||||| | | | || || | || || ||||| |||||| | | ||| Sbjct 6571 ATCTGGCCTAACCTTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATACAAACTAGA 6630 Query 67733 AGTAACAAGAG-AACCGTGCATAGCACTAAAG-AGTGAACCACCGAATAC 67780 ||| || | || |||| ||||||||||||||| || | | | |||||||| Sbjct 6631 AGTTACCAAAGGAACCATGCATAGCACTAAAGTAGGGCAGCGCCGAATAC 6680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566891851779600