Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1269 145 9e-30 seq504 114 1e-20 seq25 96.9 4e-15 >seq1269 Length=73620 Score = 145 bits (160), Expect = 9e-30 Identities = 324/453 (72%), Gaps = 49/453 (11%) Strand=Plus/Plus Query 67835 CAGCAGCAGCAAGGTCGAGAGGGAAGTT-GT--GTGCGT-TACGCTCATGC-ATAACTTC 67889 || ||||||| ||||| || |||||||| || | |||| |||| |||||| |||||||| Sbjct 6214 CAACAGCAGCTAGGTCTAGTGGGAAGTTCGTTGGAGCGTGTACGTTCATGCCATAACTTC 6273 Query 67890 CATACCCAA----ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAG--AAC-----C 67938 ||||||||| |||| ||||| | || || ||||| ||| || ||| | Sbjct 6274 CATACCCAAGGTTACCA---CGGTTAATAATATCAGCCCAAGTATTCAATTAACACGTCC 6330 Query 67939 TTACCAG-AACTATCAAGGATA-GACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCA 67996 || | | ||||| || ||| | ||||||| ||||||||||| |||||||| |||| Sbjct 6331 TTGCTATCAACTA-CACTGATTTGGGGGGTTGAAATTGAAACCATTTAGGTTGAAAGCCA 6389 Query 67997 T-GGTGCTAACACCAAGTGC-AGTGAAC-CAGATA-CCAACGA-CAGGCCATGCAGC--A 68049 | | | | | ||| | || ||| ||| || ||| || || | | ||||| || || | Sbjct 6390 TAGCTACATAAACCTAAAGCAAGTAAACACAAATACCCTACTACCGGGCCAAGCCGCCTA 6449 Query 68050 AGGAAGAAGTGCAGCGAACG-GGAGTTGTTG----AACGATGCATACTGGAAGA--TCAG 68102 |||||| || | ||||| |||||||||| ||| | ||||| ||||||| ||| Sbjct 6450 GAGAAGAAATGTAAAGAACGAGGAGTTGTTGATGAAACTA-GCATATTGGAAGATGTCAA 6508 Query 68103 ACGACC-GAAGTATCCATGTGCAGC--AAC-AATGTTGTAAG-TCTCTTCTTCTT-GACC 68156 || || || || ||||| ||||| ||| ||||||||||| |||||||||||| |||| Sbjct 6509 TCGGCCAAAAATAACCATGAGCAGCCTAACAAATGTTGTAAGTTCTCTTCTTCTTGGACC 6568 Query 68157 GAACTTG---TAACCAT-AGTTCTGGGACTCAGTTTCAGTGGTTTCAC-GAACCAGTGAA 68211 ||| || ||||| | || || ||| |||| |||||||| | || || | Sbjct 6569 GAATCTGGCCTAACCTTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATACAAACTA 6628 Query 68212 GAAGTAACC-AGGGAACCATGCATTGCACTGAA 68243 ||||| ||| | |||||||||||| ||||| || Sbjct 6629 GAAGTTACCAAAGGAACCATGCATAGCACTAAA 6661 >seq504 Length=87311 Score = 114 bits (126), Expect = 1e-20 Identities = 333/486 (69%), Gaps = 49/486 (10%) Strand=Plus/Plus Query 66875 AAAGATCTGAGACCAGAAGCGGTTT--GCAGTA-ACCATTGAG-TAAGTTTCTTCCTCTT 66930 |||||| || ||||| |||||| | || || |||||||| ||||||||||| ||| Sbjct 50958 AAAGATTTGTGACCAAAAGCGGGTGTAGCGGTTGACCATTGAAATAAGTTTCTTCGGCTT 51017 Query 66931 GAGTAGAGTCGAATGCTTTGAAAG---TGTTTGC-------TTGTTCACCATCTTCATAC 66980 |||| | || || || | || | | ||| | ||||||||||| | Sbjct 51018 GAGTTGGGTTAAAAGCAGCGGAATGTATCTCTGCCACAAAATCCCCCACCATCTTCAAAT 51077 Query 66981 AGAGTATTCTCTACT-GTAACACCATGAATGGCAGAA-AGCAATGCACCACC--CAGGAT 67036 | |||||| ||||| ||| |||||||||| || | | |||| || | || ||| | Sbjct 51078 AAAGTATTTTCTACCAGTAGCACCATGAATAGCCGCATAGCAGAGCCGCGCCGCCAGTAC 51137 Query 67037 ACCTGCTACA-CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAA-TCCTT-GTAG 67093 ||| || || |||||||||||||| |||||||| ||||| ||||| || |||| | | Sbjct 51138 ACCGGCGACTTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACGCCTTGGAAA 51197 Query 67094 GAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGA 67153 || || | ||||||||| || | | | ||| | || || || ||| || || Sbjct 51198 AAAAAGGATGAATCGAAATATAGGTAA-------AAATA-GGCGCAAAGAAC--ACCAGA 51247 Query 67154 TTGACCCA--GAGGGTAGATGA---GAAAGACACTAACAAAAACAGCGATAGGACCAGAG 67208 |||||| | | || || || | | |||||| ||| |||||||| || ||||||||| Sbjct 51248 TTGACCTAACGTGGATAAATTACTCGGAAGACAGAAAC-AAAACAGCAATTGGACCAGAG 51306 Query 67209 AACGCAATAGCATT-GTAGGGACGGATACCGATG-AGACGTGCCAGTTCAAACTGG---C 67263 || || || ||||| || || || | || | ||| | || |||||||| | | | Sbjct 51307 AATGCGATTGCATTAATAAGGTGCGA-ATTGAGGCAGATGAGCAAGTTCAAAATTGAACC 51365 Query 67264 GA-AGCATGAA--ACCAATTAGAGCGAAAGCCCCGTGGAGC-GCCACA-AAATTCCAGAG 67318 || | |||||| ||| |||| ||||||| |||| |||| |||| | ||| ||| || Sbjct 51366 GATAACATGAAACACCTATTAATGCGAAAGGGCCGT-GAGCAGCCAGACAAAGCCCACAG 51424 Query 67319 TCCTCC 67324 || || Sbjct 51425 ACCACC 51430 >seq25 Length=160953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 68593 TAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68652 ||||| || | |||||| || ||| |||||| || ||||| ||||| || ||||| Sbjct 127128 TAAAAATGCAAACCAATCGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 127069 Query 68653 CCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAG 68710 || || ||||| || |||| ||||||||||||||||||||| || || || || |||| Sbjct 127068 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG 127011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571998553189200