Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq308 127 4e-24 seq3586 100 5e-16 seq2666 87.8 3e-12 seq683 84.2 4e-11 >seq308 Length=205501 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||||| ||||| |||| ||| | || | ||||| || || || ||| Sbjct 131162 ATACCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCG 131221 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||||| || ||||| || | ||||||||| || ||| Sbjct 131222 GCAAGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGA 131281 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || || | ||| | ||| || || || || |||| Sbjct 131282 GGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCA 131341 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || || ||||| |||||||||||||| Sbjct 131342 ACTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | ||||| || || ||||| ||||||||||||||||| || Sbjct 131474 TGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGGATC 131533 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | || |||||| || || ||||| || ||||| || || || ||| Sbjct 131534 TTTGCCTTGACGTTATCAATAGTGTCAGAGCTTTCAACCTCAAGAGTAATGGTCTTCCCT 131593 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 131594 GTAAGAGTCTTAACAAAGATTTGCAT 131619 >seq3586 Length=17470 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| ||||| || |||| || | || | ||||| || || || ||| Sbjct 5538 ATACCACCTCTTAATCGGAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAATCG 5479 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| |||| ||||||||||| || || || || || ||||| ||| Sbjct 5478 GCCAAGGTACGGCCATCTTCTAGCTGTTTTCCGGCGAAGATCAACCTTTGCTGATCCGGA 5419 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | ||| || ||||| || ||| Sbjct 5418 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTAACATTGTCGATGGTATCAGAGCTCTCG 5359 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||| || || | |||||| Sbjct 5358 ACATCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAACTTGCAT 5309 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || || || || | ||||| || || || || ||||| ||||||||||| || Sbjct 6138 TGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATC 6079 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| || || || || |||||| || || || || ||||| ||| Sbjct 6078 TTAGCCTTGACATTGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTTTTCCCT 6019 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| || ||||| Sbjct 6018 GTTAGAGTTTTGACAAAGATCTGCAT 5993 >seq2666 Length=20083 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || || || || | ||||||||| || | | || |||||||| Sbjct 9353 ATCTTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTT 9412 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || |||| || | ||| || || || || |||||||||||| ||||| Sbjct 9413 GTCGTGAATCTTGGCCTTGACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTAT 9472 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||| ||||| || ||||| Sbjct 9473 GGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCAT 9508 >seq683 Length=32930 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | | | |||| || | ||||| |||||| ||| || || || | | Sbjct 24641 CCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAATCAGCT 24582 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||| | ||| ||||||||||| || ||||| || || ||||||||||| || ||| Sbjct 24581 AAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCTGGTGGT 24522 Query 193254 ATTCCTTCTTTATC 193267 || || ||||| || Sbjct 24521 ATCCCCTCTTTGTC 24508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899566571239200