Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq308 98.7 1e-15 seq275 89.7 8e-13 seq516 84.2 3e-11 >seq308 Length=205501 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | ||||| ||||| ||||| ||||||| || ||| Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||| || ||||| || ||||| || ||||| || ||| Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAA 131272 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| ||||| ||||| || ||| | ||| | | ||||| || Sbjct 131271 CAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAAC 131212 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || |||||||| || Sbjct 131211 ATCCAGAAAGAATCAACCCTTCATTTGGT 131183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || || || ||||| | || || ||| ||| Sbjct 131619 ATGCAAATCTTTGTTAAGACTCTTACAGGGAAGACCATTACTCTTGAGGTTGAAAGCTCT 131560 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || || || |||||||||||||| || ||||| || || Sbjct 131559 GACACTATTGATAACGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCTCCGGACCAG 131500 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| |||||||||||||| ||| | | ||| | | ||||| || Sbjct 131499 CAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGGACTCTTGCGGATTACAAC 131440 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 131439 ATCCAGAAGGAGTCAACACTTCA 131417 >seq275 Length=143682 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || ||||| ||||| || | || || || ||| Sbjct 139100 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAGACTATCACTCTTGAGGTGGAGAGCTCT 139159 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || |||||||| || || || || || || || Sbjct 139160 GACACCATCGACAACGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 139219 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| ||||| ||||| || | | |||||| | || || || Sbjct 139220 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGTACTTTAGCTGACTACAAC 139279 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| |||||| |||| Sbjct 139280 ATTCAGAAGGAGTCGACCCTTCATCTAGT 139308 >seq516 Length=37039 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || | || || ||||| || || || || || ||| || Sbjct 10444 ATGCAGATATTCGTCAAGACCCTTACCGGTAAAACCATAACTTTGGAGGTTGAAAGCTCA 10385 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || ||||| || ||||| || || ||||| ||| Sbjct 10384 GATACCATTGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 10325 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| | || | ||||| ||||||||||||||| Sbjct 10324 CAAAGACTCATATTCGCCGGCAAGCAGCTCGAAGAT 10289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731800550996000