Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq308 127 4e-24 seq683 113 9e-20 seq3586 109 1e-18 seq516 107 4e-18 seq1 107 4e-18 seq1061 100 6e-16 >seq308 Length=205501 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||| | || ||||| | || | ||||| ||| || ||||| Sbjct 131162 ATACCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCG 131221 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||||||||||||||| | ||||||||| || || Sbjct 131222 GCAAGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGA 131281 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || ||| ||| ||||| | | || || || Sbjct 131282 GGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCA 131341 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| ||||||||||| ||||| | ||||| | |||||| ||||| Sbjct 131342 ACTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | || | ||| || ||| || |||||| Sbjct 130706 ATGCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCA 130765 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||||||||||| ||||| | ||||||||| || || Sbjct 130766 GCAAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGA 130825 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| | || ||||| | | || || || Sbjct 130826 GGGATCCCTTCCTTGTCTTGGATTTTTGTCTTCACATTGTCGACTGTGTCCGAGCTCTCC 130885 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| || || | || |||| ||| |||||||| Sbjct 130886 ACTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | || | ||| | |||||| ||| || || || | Sbjct 130481 CCACCGCGGAGACGGAGAACAAGGTGAAGAGTCGACTCTTTTTGGATGTTGTAGTCTGCA 130540 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | || |||||||||||||| | ||||||||| || ||||| Sbjct 130541 AGAGTACGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 130600 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| || || || |||||| || || ||||| || || Sbjct 130601 ATCCCTTCTTTGTCTTGAATCTTTGCCTTCACATTATCTACAGTGTCTGAGCTCTCAACC 130660 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| |||||||| || |||| || || | ||| |||||||| Sbjct 130661 TCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTGACAAAAATCTGCAT 130707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | || | || | ||| || ||| || ||||| Sbjct 131390 ATGCCACCGCGAAGACGAAGGACAAGGTGAAGTGTTGACTCCTTCTGGATGTTGTAATCC 131449 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || |||||||||||||| | ||||| || || || Sbjct 131450 GCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGA 131509 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || || || || ||| |||| || || ||| Sbjct 131510 GGGATTCCTTCTTTATCTTGGATCTTTGCCTTGACGTTATCAATAGTGTCAGAGCTTTCA 131569 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || || || | || |||| ||| || ||||| Sbjct 131570 ACCTCAAGAGTAATGGTCTTCCCTGTAAGAGTCTTAACAAAGATTTGCAT 131619 >seq683 Length=32930 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||||||||| | || || || || | |||| |||||| || || ||| Sbjct 24647 ATAGTCCCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGTAA 24588 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 |||| ||| ||||| |||| || ||||||||||||||||| || || ||||||||||| Sbjct 24587 TCAGCTAAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGATCT 24528 Query 192424 GGTGGTATTCCTTCTTTATC 192443 |||||||| || ||||| || Sbjct 24527 GGTGGTATCCCCTCTTTGTC 24508 >seq3586 Length=17470 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | || | || | || || ||| || || ||| Sbjct 6222 ATACCACCACGAAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 6163 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | ||||| ||||| ||||| | ||||| || || ||| Sbjct 6162 GCCAGTGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGT 6103 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||||||||| || ||| || ||||| || | ||||| || Sbjct 6102 GGGATTCCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCGATTGTGTCTGAGCTCTCA 6043 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||||||||| || |||| ||||| | ||| |||||||| Sbjct 6042 ACCTCGAGGGTAATGGTTTTCCCTGTTAGAGTTTTGACAAAGATCTGCAT 5993 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | || | || | ||| || ||| || || ||| Sbjct 5994 ATACCACCTCTGAGACGAAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 5935 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || |||||||| ||||| | ||| || || || || Sbjct 5934 GCGAGTGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTTTGCTGGTCCGGA 5875 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || || ||| || |||||| |||| ||||| || Sbjct 5874 GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATAGTGTCTGAGCTCTCG 5815 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| || || | || |||| ||| |||||||| Sbjct 5814 ACCTCCAACGTAATGGTTTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 5765 >seq516 Length=37039 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | || |||||||||||||| | ||| ||||| || ||||| || ||||||| Sbjct 10060 CATCCTCAAGCTGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCTT 10119 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || ||||||||| ||| | ||||| || || || | ||| | Sbjct 10120 TGTCTTGAATCTTTGCCTTTACATTATCTATTGTGTCTGAGCTCTCAACCTCCAAAGTTA 10179 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||||| ||||| | ||| |||||||| Sbjct 10180 TGGTTTTGCCAGTTAGGGTTTTCACAAAAATCTGCAT 10216 >seq1 Length=111110 Score = 107 bits (118), Expect = 4e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| ||||| | || ||||| | || | |||||| ||| || ||||| | Sbjct 60648 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 60589 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| | | | || |||| ||| || || || ||||| | | ||| ||||| ||||| Sbjct 60588 GAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGG 60529 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || || ||||| || | || || ||||| || Sbjct 60528 GATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGATTCAAC 60469 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||||| || || || || || |||| ||||| | || ||||||||||| || Sbjct 60468 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 60415 >seq1061 Length=128926 Score = 100 bits (110), Expect = 6e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| | | || | ||| | ||||| |||||| ||| || ||||||| | Sbjct 82979 CCACCTCTAAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCT 83038 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||| ||||||||||| || | || ||||||||||||||| Sbjct 83039 AGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGATCAGGTGGT 83098 Query 192430 ATTCCTTCTTTATCTTGT 192447 || || ||||| || ||| Sbjct 83099 ATACCCTCTTTGTCCTGT 83116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984381487393500