Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq308 113 8e-20 seq683 107 3e-18 seq516 105 1e-17 seq3586 93.3 8e-14 seq1 93.3 8e-14 seq1061 84.2 4e-11 >seq308 Length=205501 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| || || | || ||||| | || | ||||| || || ||||| Sbjct 131162 ATACCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCG 131221 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | |||||||||||||| || | |||||||||||| || Sbjct 131222 GCAAGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGA 131281 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || ||| ||| ||||| | || || || || Sbjct 131282 GGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCA 131341 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| ||||||||||| ||||| | ||||| | ||||| ||||| Sbjct 131342 ACTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || | |||||||||||| ||||| || |||||||| ||||| || Sbjct 130562 TGCTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATC 130621 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || ||| ||||| || || || | ||| |||||||| || Sbjct 130622 TTTGCCTTCACATTATCTACAGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTTCCG 130681 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || | || |||||||| Sbjct 130682 GTTAGGGTCTTGACAAAAATCTGCAT 130707 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || || || | || | ||| || || || ||||| Sbjct 130706 ATGCCACCTCTTAGACGAAGGACCAAGTGCAGGGTTGACTCCTTCTGGATGTTGTAATCA 130765 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | ||||||||||| || || | |||||||||||| || Sbjct 130766 GCAAGAGTTCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGA 130825 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| | || ||||| | || || || || Sbjct 130826 GGGATCCCTTCCTTGTCTTGGATTTTTGTCTTCACATTGTCGACTGTGTCCGAGCTCTCC 130885 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| || || | || |||| || |||||||| Sbjct 130886 ACTTCCAAAGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATCTGCAT 130935 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || | ||||| ||||| || || ||||||||||||||||| || Sbjct 131474 TGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGGATC 131533 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || || ||| ||||| || || ||| || || ||||||||||| || || Sbjct 131534 TTTGCCTTGACGTTATCAATAGTGTCAGAGCTTTCAACCTCAAGAGTAATGGTCTTCCCT 131593 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| || || ||||| Sbjct 131594 GTAAGAGTCTTAACAAAGATTTGCAT 131619 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || || || | |||||||||||| |||| || ||||| || ||||| || Sbjct 131018 TGCTTGCCGGCGAATATGAGTCTCTGTTGGTCTGGTGAGATCCCTTCCTTGTCTTGGATC 131077 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || |||||||| | |||||||| ||| || || | ||| ||||||||||| Sbjct 131078 TTGGCCTTTACATTGTCAACGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCG 131137 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | |||||||||||| Sbjct 131138 GTAAGGGTCTTGACGAATATCTGCAT 131163 >seq683 Length=32930 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||||||||| | || || || || | |||| |||||| ||| || | Sbjct 24649 TCATAGTCCCACCTCTAAGCCTCAAAACCAAGTGAATTGTAGACTCTTTCTGAATGTTGT 24590 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | ||||| ||| | || || ||||||||||||||||| || || |||||||| | Sbjct 24589 AATCAGCTAAAGTTCGACCATCTTCTAATTGTTTACCAGCAAATATCAACCTCTGTTGAT 24530 Query 171955 CAGGTGGTATTCCTTCTTTATC 171976 | |||||||| || ||||| || Sbjct 24529 CTGGTGGTATCCCCTCTTTGTC 24508 >seq516 Length=37039 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || | ||| |||||||| ||||| || |||||||| ||||| || Sbjct 10071 TGCTTACCAGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATC 10130 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||||||||| ||| || ||||| || || || | ||| |||||||| ||| Sbjct 10131 TTTGCCTTTACATTATCTATTGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTGCCA 10190 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| | || |||||||| Sbjct 10191 GTTAGGGTTTTCACAAAAATCTGCAT 10216 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || || || || || | ||| |||||||| ||||| || ||||| || ||||| || Sbjct 10299 TGCTTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATC 10358 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || |||||||| ||| || || | ||| ||||||||||| Sbjct 10359 TTGGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTTTTACCG 10418 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | |||||||||||| Sbjct 10419 GTAAGGGTCTTGACGAATATCTGCAT 10444 >seq3586 Length=17470 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||| || || | ||||| ||||| ||||| ||||| ||||||||||| || Sbjct 6138 TGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATC 6079 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || || || || ||||||||||| || Sbjct 6078 TTAGCCTTGACATTGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTAATGGTTTTCCCT 6019 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| | || |||||||| Sbjct 6018 GTTAGAGTTTTGACAAAGATCTGCAT 5993 >seq1 Length=111110 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| || || | || ||||| | || | |||||| || || ||||| | Sbjct 60648 ACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGGC 60589 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | | | |||| |||| ||| || || || || || | | ||| || || ||||| Sbjct 60588 GAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTGG 60529 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || || ||||| || || || || ||||| || Sbjct 60528 GATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGATTCAAC 60469 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||||| || || || || || |||| ||||| | ||| ||||||||||| || Sbjct 60468 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 60415 >seq1061 Length=128926 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | ||||||||||| | | || | ||| | ||||| |||||| || || | Sbjct 82971 TCATGGTTCCACCTCTAAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGT 83030 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | || || ||| | || || | ||| ||||||||||| || | || ||||| | Sbjct 83031 AATCAGCTAGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAATATCAGCCTTTGTTGAT 83090 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||||| || ||||| || ||| Sbjct 83091 CAGGTGGTATACCCTCTTTGTCCTGT 83116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905047636098000