Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq108 123 7e-23 seq4792 122 3e-22 seq236 118 3e-21 seq422 111 5e-19 seq3342 109 2e-18 seq146 109 2e-18 seq278 102 2e-16 seq1401 87.8 5e-12 seq1247 87.8 5e-12 >seq108 Length=228766 Score = 123 bits (136), Expect = 7e-23 Identities = 279/412 (68%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| ||||| ||||| || || ||||| || | ||| || ||| | Sbjct 111274 TAAACCCGTCCATTTCGGTTAAGATTTGGTTCAGCGTTTGCTCACGTTCGTCGTTTCCTC 111333 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| | | ||| || | |||| ||||||||| || |||||||| | Sbjct 111334 CTCCT--AT-ACCTGTTCCTCTCATTCTC---CCAATAGCATCAATCTCATCAATGAATA 111387 Query 289058 TCACACACGGAGAATT-----TTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || ||||| ||| || | ||| || || ||||| || | || || Sbjct 111388 CTAAACAAGGTGAATTAGCCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGACGC 111442 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| || || || |||| | | | |||| ||| Sbjct 111443 TCCTACACCAACAAACATCTCTATGAACTCCGAGCCGGACAATGAGAAAAATGGAACACC 111502 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||| || ||||| || |||||||||||||| || Sbjct 111503 GGCTTCTCCGGCTATAGCCTTGGCCAAGAGAGTCTTTCCCGTTCCAGGTGGTCCGGTCAA 111562 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAAA 289291 | || || ||||| | ||| ||||| || || | ||||||| ||| | | || | Sbjct 111563 CAAGACGCCTTTTGGGATTTTAGCCCC-CAAGGCTGAGAATTTCTCTGGGGTTCTCAAGA 111621 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| || || || |||| || | ||||| || || |||||||||||| Sbjct 111622 ATTCAACGATCTCTTCAAAGTCTTGCTTTGCTTCGTCTACTCCTGCTACATC 111673 >seq4792 Length=4203 Score = 122 bits (134), Expect = 3e-22 Identities = 284/419 (68%), Gaps = 16/419 (4%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| || |||| ||||||| ||||||||||| |||||||| ||| Sbjct 1331 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACCACC 1390 Query 288999 TCTTGAATCACCCGAATCGCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAA 289056 || || | | |||||| ||| | || ||||||||||| || ||||| || Sbjct 1391 TC-----CCATTCCA---GCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAAC 1442 Query 289057 ATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| |||| ||| | | |||| | |||| || || || || | || || || Sbjct 1443 ACAATACAAGGAG-CTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACC 1501 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTG 289174 || ||||||| | | || ||||| |||||||| | | || || ||| | ||| | Sbjct 1502 AACACCAACAAAAAGCTCAACAAACTCAGAAGCAGCACAC-GAAAAGAACGGTACTCCCG 1560 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || || || || |||| ||| || || ||||| || ||||| || | |||| Sbjct 1561 CTTCTCCAGCGACAGCTCTAGCCAAAAGCGTTTTCCCTGTACCCGGTGGACCAACCAATA 1620 Query 289235 GAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||| ||||| |||| || || || || |||| || ||||| |||| || || Sbjct 1621 -AACAACCTTTAGGTATCTTAGCACCTAAAGCTGTATACTTATCAGGATTCTTCAAGAAA 1679 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| ||| | | ||| || || | |||| || || ||||| |||| || Sbjct 1680 TCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCACCAGCAACATCTCCAAATGT 1738 >seq236 Length=170583 Score = 118 bits (130), Expect = 3e-21 Identities = 316/468 (68%), Gaps = 29/468 (6%) Strand=Plus/Minus Query 288893 CGGCTCTGTTTGTTGCTGCCAATACA---ACAATAGATTCGGTTTGCTTAAATCCATCCA 288949 |||| || || || |||||||||||| ||| ||| | || ||||||||||| Sbjct 103775 CGGC-CTATTCGTGGCTGCCAATACAATCACACCAGAAT---TTCCAGAAAATCCATCCA 103720 Query 288950 TACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCAC 289009 | || || | ||||||| || ||||| || ||||||||| |||| | || Sbjct 103719 TCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTT---CCTCCT--CCCAT 103665 Query 289010 CCGAATCGCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGG 289067 || | |||||| | | | || ||||||||||| || |||||||| | | || || Sbjct 103664 CCCA---GCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATGCAAGG 103608 Query 289068 AGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACAT 289126 || ||| | | | || | |||| || ||||| || | ||||| |||| ||| ||| Sbjct 103607 AG-CTTTCGCCTTAGCCTTCTCAAACAAATCTCTAACTCTAGATGCACCAACACCCACAA 103549 Query 289127 ACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCT 289185 | | || ||||| || ||||| | | || | ||||| ||| |||||| || || Sbjct 103548 AAAGCTCAACAAACTCTGAAGCCG-CGCAGGAGAAGAATGGTACTCCTGCTTCTCCAGCC 103490 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245 ||||| || |||| || |||||||| || ||||| ||||| | || ||| |||||| Sbjct 103489 ACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAAC-AAGCAAACACCCTTT 103431 Query 289246 GGTACTTTTG--CCCCA--GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 | | | ||| |||| |||| | || || |||||| |||| ||||| || |||| Sbjct 103430 AGGAATCTTGGCACCCAAGGCAG---TGTACTTATCAGGGTTCTTCAAAAAATCCACAAC 103374 Query 289302 TTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 ||||| | ||| || || | |||| || || ||||| || || Sbjct 103373 TTCCTGTAACTCAAGCTTGGCTTGATCAGCCCCAGCAACATCTGCGAA 103326 >seq422 Length=101449 Score = 111 bits (122), Expect = 5e-19 Identities = 267/401 (67%), Gaps = 15/401 (4%) Strand=Plus/Minus Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 || || || ||| | || ||| || ||| || || ||| || ||||| | |||| Sbjct 44171 GACGGCATCGTTTTAGAGAATCTATCAACCCGATTCATGTCCGATGTTCAGATCTCCGAG 44112 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 || ||||||||||| || | || || ||||| || ||||| || ||| | ||| | Sbjct 44111 GCTCGTGCCTTTTACGGATTTCAAATCGCGATTGAGAATATTCACTCTGAGATGTATAGT 44052 Query 133370 ACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT 133429 || | |||||||| |||||||||| | ||| | | || ||| ||| ||| Sbjct 44051 CTCCTTCTCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATT 43992 Query 133430 --AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA-GGA- 133485 | | | |||||||| | | |||||| | | ||||| || ||||||||| | ||| Sbjct 43991 GAAACCA--TTCCTTGTGTAACGAAGAAAGCACAATGGGCGATGAAATGGATCGACGGAT 43934 Query 133486 --CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 ||| || || ||| || |||| ||||||||| || || || || || Sbjct 43933 CTCAA-------AGCTTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTC 43881 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||| ||| || || |||||||| ||| | || || || ||| | | |||||||| Sbjct 43880 TTCTCCGGTAGCTTTTGTTCTATTTTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTT 43821 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCA 133644 ||| || |||||||| || ||||| ||||| | ||||| Sbjct 43820 ACTTTCTCCAACGAACTGATCTCAAGAGACGAAGGTCTTCA 43780 >seq3342 Length=29012 Score = 109 bits (120), Expect = 2e-18 Identities = 307/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 || || |||||||| ||||| || | ||| | || | | | || ||| |||||| Sbjct 13868 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACACCAGTGTTACCCTCAAAACCATCC 13927 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || || | | ||||||||||| ||||| ||||||||||| ||||| || Sbjct 13928 ATCTCAGTCAGGAGCTGATTAAGTGTCTGTTCTCTTTCATCATT---ACCTC------CA 13978 Query 289009 CCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||| ||||| || | |||| | || Sbjct 13979 CCA-ATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAAACAATGCA 14037 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 ||||| ||||| | | || || || | |||| || | || || |||| ||| || Sbjct 14038 CGGAGCATTTTCTTTGGCCTTTTTGAAAAGATCTCGGACCCTTGAGGCACCAACACCGAC 14097 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | || ||| | |||| ||||| || || Sbjct 14098 AAACATCTCAACAAACTCAGAACCAGAGATGGAAAAGAAGGGTACACCGGCTTCACCAGC 14157 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | |||| || || || || || ||||| || || | | ||||| || || Sbjct 14158 AATGGCTTTTGCCAAGAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 14217 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| | | || | ||||||| |||| | ||| || || | ||| Sbjct 14218 GGGGATCCGGGCACCAACCGCAGTAAACCTCTCAGGCTTCTTCAGAAACTCAACCACTTC 14277 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | ||| || ||||| ||| || || ||| ||||||| Sbjct 14278 CATGAAATCTTGTTTGGCTTCATCGACTCCAGCAACGTCATCAAAAGT 14325 >seq146 Length=91395 Score = 109 bits (120), Expect = 2e-18 Identities = 227/338 (67%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||| || ||| |||||| || |||||| || |||||| || | || || | | Sbjct 13318 TTTCGGACTGTCCCATCATATTTAACCATAATATCCTCCATAGCTTTTACCAATCGCCTC 13377 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| || |||||| ||||| || ||||| |||||||| ||||| | | || ||| Sbjct 13378 TGAATGTATCCAGTTTCTGATGTCTTCACAGCAGTATCAATAAGACCTTCCCTTCCTCCC 13437 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||||||||| || | |||| || | ||| | | | || ||||||| || Sbjct 13438 ATAGCATGGAAAAAGAATTCTTGAGGAGTCAACCCTCGCAGGTAAGAATTCTCAACAAAT 13497 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| || || || || ||||| || || |||| |||| | ||| | Sbjct 13498 CCACGACTTTCAGGACCATAATCATCTTTGGTGAAATGCGGCAATGTCCGGCCATCAAAT 13557 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || |||| || |||||||| || || || ||||| || | |||| |||| || ||| Sbjct 13558 CCAAATGGAATCCGCTTTCCTTCTACATTTTGCTGACCGACACACGCCGTCATTTGAGAA 13617 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| | ||| || ||||| || || | ||||| Sbjct 13618 ATATTAATGAAACTTCCTTTGGATCCTGCTGTCACCAT 13655 >seq278 Length=108333 Score = 102 bits (112), Expect = 2e-16 Identities = 326/494 (66%), Gaps = 30/494 (6%) Strand=Plus/Minus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGG 288931 ||| || | ||| | || || |||||||| || || || | ||| | || | | | | Sbjct 39048 TAAAGCAGAGTCAAGAATGTCTGCTCTGTTGGTGGCAGCAACTACGATAACACCAGT--G 38991 Query 288932 TTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCA 288990 || ||| ||| |||||||| |||| | |||||||| || ||||| ||||||||| Sbjct 38990 TTACCTTCAAAACCATCCATCTCAGTTAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCA 38931 Query 288991 TTTGAACCTCTTGAATCACCCGAATC---GCTCCttttt--ttACCAACAGCATCAATTT 289045 || ||||| |||| |||| | |||| ||| ||||||||||||| |||| Sbjct 38930 TT---ACCTC------CACC--AATCCCGGTTCCTCTTTGCCTACCAACAGCATCTATTT 38882 Query 289046 CGTCAATGAAAATCACACACGGAGAATT----TTGTCTCGCAATTGCAAATAATTCTCTT 289101 | || | || | | || |||| ||| ||| || | ||| ||| | || | Sbjct 38881 CATCTACAAAGACAATGCAAGGAGCATTCTCCTTGGCTTTC--TTGAAAAGA--TCGCGG 38826 Query 289102 ACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-AT 289160 || | || || |||| ||||||| |||| || ||||| |||||| | || | | || | Sbjct 38825 ACTCTCGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAA 38767 Query 289161 GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGG 289220 ||| | ||| ||||| || || | || | |||| ||| || || ||||| ||||| Sbjct 38766 GAAAGGAACACCAGCTTCACCAGCGATGGCTTTTGCCAAAAGGGTTTTCCCTGTACCAGG 38707 Query 289221 TGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGG 289280 || || | ||||| || || || | || || ||| ||| | || |||| || Sbjct 38706 AGGACCAATAAGGAGAACACCTTTCGGGATCTTGGCACCAACAGCAGTGAATCTCTCGGG 38647 Query 289281 GCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTAC 289340 |||| | ||| || || | |||| | || | || || |||||| || || || Sbjct 38646 CTTCTTCAGAAACTCAACCACTTCCATGAAATCTTGCTTAGCTTCATCAACACCAGCAAC 38587 Query 289341 ATCAGCAAAAGTAA 289354 |||| |||| |||| Sbjct 38586 ATCATCAAACGTAA 38573 >seq1401 Length=32814 Score = 87.8 bits (96), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 ||||| |||||| | ||| ||||| || ||||| || ||||| | ||||||| | || | Sbjct 17043 ACTTACTTGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCA 16984 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403 | | |||||| ||| ||| || | || |||| || | | |||||| | Sbjct 16983 TCTCTGAGACATCAAATGGTAAGTTTTGATAGCAGATTCAATATCATCCTTGTGAATGCC 16924 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463 | || ||||||||| ||| || ||||| | || |||| || | | | || Sbjct 16923 AACAGCAACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAA 16864 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 |||||||| | ||| |||||||||||||| || ||||| | ||||||||||| Sbjct 16863 AAGGTATGATCTTTCAAGAGTTTTAAACCCAAAGAAATCATATTCAAAATCACGGT 16808 >seq1247 Length=61696 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| | ||||||||| || || || |||||| ||| | || Sbjct 34676 GGCGATGAGCCCACAGACTTCACACACATGTACCCTATACGCATCACTCTGATCAAACAG 34735 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || ||| ||| |||||||||| |||||| |||||||| |||||||| || Sbjct 34736 CCTCTCTTTCAAAAAGTGAGCAGCACCGTGTGCAATCATGCAATCACGTTCCATTTCTCC 34795 Query 251523 GAAACGAAGACCACCATCGCG 251543 ||||| ||||||||||| || Sbjct 34796 AAAACGGAGACCACCATCACG 34816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471670321651970