Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq317 143 3e-29 seq1269 111 2e-19 seq1129 82.4 8e-11 >seq317 Length=114279 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 158735 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 158794 |||||||| || ||| | || |||||||| || ||||| ||| |||| | |||| Sbjct 8583 TGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTAC 8642 Query 158795 TCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 158854 || || ||||||||| ||||||| | ||||| |||||| ||| ||||| ||||||||| Sbjct 8643 TCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGAT 8702 Query 158855 CAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGT 158914 ||| ||| ||| ||| | || ||||| ||||||| | ||||| |||||| || ||| Sbjct 8703 CAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCACTTGT 8762 Query 158915 GTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA 158961 | || ||||| || |||||| ||| || ||| | ||||| || Sbjct 8763 GCGGCTTATCCTACTTCTGATGTTGTCATTAGAACTCACCAAGAAGA 8809 >seq1269 Length=73620 Score = 111 bits (122), Expect = 2e-19 Identities = 256/360 (71%), Gaps = 37/360 (10%) Strand=Plus/Minus Query 158246 TTCGGTC-AAGAGGAAGAGACCT-ATAACATC-GTC--GCAGCACATGGCTACTTC-GGT 158299 ||||||| |||| ||||||| || | ||||| || || || ||||| || || || Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 158300 CGTTTGA--TCTTCCAATACGCT----TCATTCAACAACTCC-CGTTCCTTGCACTTCTT 158352 || |||| |||||||||| ||| |||| |||||||||| ||||| || || ||||| Sbjct 6511 CGATTGACATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTT 6453 Query 158353 CCTT--GCTGCATGGCCTGTT-GTCGGC-ATCTG-GTTCACCGCCCTT-GGCGTCTCCA- 158405 | | || || ||||| | | || || || || ||| || | || || | | | Sbjct 6452 CTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAG 6393 Query 158406 CGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCC-------TTGATGGT 158458 | ||||| |||||||| || |||||||| ||||||| | | | ||||| | Sbjct 6392 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG- 6334 Query 158459 CAGGGTCGTGTG--TTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGG-TATG 158515 || || ||||| ||||| || ||||| ||| | | ||||| | | ||||| |||| Sbjct 6333 CAAGGACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATG 6274 Query 158516 GAAGTTATG-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTCGACCTTGCTGCTGCTG 158570 ||||||||| ||||| |||| |||| | || ||||||||||| ||||| ||||||| || Sbjct 6273 GAAGTTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq1129 Length=53819 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 158740 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTG 158799 ||| || |||||||| | || ||||| ||||| ||||||||||| | ||||||||| Sbjct 9098 AGACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGAGTTACCTTACTCTTG 9039 Query 158800 TCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAG 158859 | |||||||| || || | || || ||||| ||||| | || | ||||| ||| Sbjct 9038 CAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATTGTTACGGGCAACGTTGACCAGTC 8979 Query 158860 TGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCA-GGATTTGTTCTTACGTGTGTAG 158918 ||| ||||| | |||||| | | ||| || | || | ||| | || ||||| | Sbjct 8978 GGATGGTTCGTTTCTCGACGAT-AGCCACTTGGAGAATGGTTATGTCTTGACTTGTGTGG 8920 Query 158919 CATATCCAACATCTGATTGTGT 158940 | || ||| ||||| ||||| Sbjct 8919 CTTACCCACAGTCTGACTGTGT 8898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548320864949200