Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq317 123 3e-23 seq504 116 4e-21 seq1269 111 2e-19 seq1129 96.9 4e-15 >seq317 Length=114279 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 |||||||| ||| ||| || | || || ||||||||| ||| |||| || ||| Sbjct 8583 TGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTAC 8642 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 || || ||||||||| | || || | ||||||||||| ||| | |||||| |||||| Sbjct 8643 TCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGAT 8702 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| |||||| ||| | |||||||| ||||||| ||||| || || || ||| Sbjct 8703 CAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCACTTGT 8762 Query 152169 GTTGCATATCCAACTTCTGATGT 152191 | || ||||| ||||||||||| Sbjct 8763 GCGGCTTATCCTACTTCTGATGT 8785 >seq504 Length=87311 Score = 116 bits (128), Expect = 4e-21 Identities = 362/531 (68%), Gaps = 57/531 (11%) Strand=Plus/Minus Query 152638 GGAGGACTCTGGGCTTT-TGTGGC-GCTCCACGGGGCTTTCGCTCTAATCGGT--TTCAT 152693 || || || |||||||| | |||| |||| |||| ||||||| |||| ||| ||||| Sbjct 51430 GGTGGTCTGTGGGCTTTGTCTGGCTGCTC-ACGGCCCTTTCGCATTAATAGGTGTTTCAT 51372 Query 152694 GCT-TCG---CCAGTTTGAACTGGCACGTCT-CATCGGTATCCGTCCCTAC-AATGCTAT 152747 | | ||| | | |||||||| || | ||| | || | || || || ||||| || Sbjct 51371 GTTATCGGTTCAATTTTGAACTTGCTCATCTGCCTCAAT-TCGCACCTTATTAATGCAAT 51313 Query 152748 TGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC---TCATCTACCCTC--TG 152802 || ||||||||||| || |||||||| ||| ||||| | | || || || | | Sbjct 51312 CGCATTCTCTGGTCCAATTGCTGTTTT-GTTTCTGTCTTCCGAGTAATTTATCCACGTTA 51254 Query 152803 GGTCAATCGAGTTGGTTTTTCGCTCC-ATCTTTCGGGGTCGCAGCAATCTTCCGATTCCT 152861 |||||||| || ||| || || || || ||| | | || || |||||| | Sbjct 51253 GGTCAATCTGGT--GTTCTTTGCGCCTATTTTT---------ACCTATATTTCGATTCAT 51205 Query 152862 TCTCTTCCTTC-AAGGA-TTCCACAACTGGACATTGAATCCGTTTCATATGATGGG-TGT 152918 || || ||| |||| || || || ||||||||||| || |||||||||||||| || Sbjct 51204 CCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAAGT 51145 Query 152919 TGCAGGTATTTTG--GGAGGGGCCTTGCT-TTCTGCCATTCATGGTGTTAC-AGTAGAGA 152974 || ||| | || || | ||| |||| | | || |||||||||| ||| ||||| | Sbjct 51144 CGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTGGTAGAAA 51085 Query 152975 ATACTTTGTATCAAGATGGTGAACAA-------GCAAACA---CTTTCAAAGCTTTCGAC 153024 ||||||| | | ||||||||| | ||| | | || | ||||| || Sbjct 51084 ATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACATTCCGCTGCTTTTAAC 51025 Query 153025 AGCACTCAAGAAGAAGAGACCTA-TTCGATGGT-TACTGCT--AACCGTTTCTGGTCCCA 153080 ||||||| ||||| || || ||| ||||| || ||| | ||| || ||||| || Sbjct 51024 CCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTTTGGTCACA 50965 Query 153081 GATATTT--GGAATTGCTTTTAGCAA--TAAACGCTGGCTT--CATTTCTT 153125 || ||| || ||||||| ||| |||||| |||||| |||||||| Sbjct 50964 AATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTT 50914 >seq1269 Length=73620 Score = 111 bits (122), Expect = 2e-19 Identities = 308/442 (70%), Gaps = 39/442 (9%) Strand=Plus/Minus Query 151427 GCAATGCACGGTTC-TCTGGTTACTTCTTCGCTGGTTC-GTGAGACCACCGAAAACGAGT 151484 || ||||| ||||| | |||| |||||| || || | || ||||| ||||| || | Sbjct 6655 GCTATGCATGGTTCCTTTGGTAACTTCTAGTTTGTATCAGGGAAACCACAGAAAATGAAT 6596 Query 151485 CCCAGAACT-ATGGTTA---CAAGTTCGGTC-AAGAAGAAGAGACCT-ACAACATC-GTT 151537 | || | ||||| || ||||||| |||||||||||| || ||||||| ||| Sbjct 6595 CTGCTAATGCAAGGTTAGGCCAGATTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTT 6536 Query 151538 --GCCGCACACGGTTACTTT-GGTCGTCT--CATCTTCCAATACGC---TTCCTTCAACA 151589 || || || ||||| ||| || || | |||||||||||| || || | |||||| Sbjct 6535 AGGCTGCTCATGGTTATTTTTGGCCGATTGACATCTTCCAATATGCTAGTTTCATCAACA 6476 Query 151590 ATTCC-CGTTCGCTGCACTTCTTC-CT-CGCAGCATGG-CCTGTTGT-CGGTATCTG-GT 151643 | ||| ||||| | || |||||| || || || ||| || || || ||||| || || Sbjct 6475 ACTCCTCGTTCTTTACATTTCTTCTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGT 6416 Query 151644 TCAC-TGCACTTGGTGTCAGCA-CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 151701 | || ||| | ||| | | | | ||||| |||||||| || |||||||| ||||||| Sbjct 6415 TTACTTGCTTTAGGTTTATGTAGCTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCC 6356 Query 151702 GTC-CATCATGGATGGTCAGGGCAAAGTC-------CTGAACACCTGGGCAGACGTTCTG 151753 | |||| | | | | |||| | | |||| || ||||| || || | Sbjct 6355 CCCAAATCAGTGTAGTTGATAGCAAGGACGTGTTAATTGAATACTTGGGCTGATATTATT 6296 Query 151754 AACCGT-GCAGGTCTGGGTATGGAAGTTAT-GCACGAGCGTA-ATGCTC--AC-AACTTC 151807 |||||| | | |||||||||||||||| ||| || |||| | |||| || |||||| Sbjct 6295 AACCGTGGTAACCTTGGGTATGGAAGTTATGGCATGAACGTACACGCTCCAACGAACTTC 6236 Query 151808 CCTCTCGACCTTGCTGCTGCTG 151829 || || ||||| ||||||| || Sbjct 6235 CCACTAGACCTAGCTGCTGTTG 6214 >seq1129 Length=53819 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||| ||||| |||||||||||||| ||||| || ||||||||| | |||||||| Sbjct 9098 AGACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGAGTTACCTTACTCTTG 9039 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111 | |||||||| |||||| |||| |||||||||||||| | || | ||||| ||| Sbjct 9038 CAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATTGTTACGGGCAACGTTGACCAG 8981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549568743113200