Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq144 125 9e-23 seq422 123 3e-22 >seq144 Length=115930 Score = 125 bits (138), Expect = 9e-23 Identities = 193/273 (71%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || ||||| || ||||||||||| ||||| || || | | |||| | ||||| Sbjct 55797 GAATGAATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGA 55738 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| ||||| ||||| |||||||| Sbjct 55737 ACATCTGACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGCGAAG 55678 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||| ||||| ||||| || || ||||| | || | |||| | | Sbjct 55677 AAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCGCGT 55618 Query 869813 GTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | | | || || || || ||||||||||||| ||| || ||||| || || || Sbjct 55617 CCGTCTTGTGAT-AGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTATA 55559 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||| | || ||||| | || || || Sbjct 55558 CATCTCCCAGATCTGTGGGTAGTGAATCGGAAA 55526 Score = 93.3 bits (102), Expect = 5e-13 Identities = 211/312 (68%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || || || |||||| ||||| || || |||| |||||||| | ||||| Sbjct 56383 GTAATCACCAACACGTTTCTCGAAGAAGTTCGTTTTACCCTGAAGCGAGATAAGTTCCAT 56324 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| ||||| || | | ||| ||| || | || |||| | | || | Sbjct 56323 CCAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAAAAGTCT 56264 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || || |||||||| || ||||| | ||| | | |||||| || | | ||| Sbjct 56263 ATCCGCAACAAACTCAATATACTGACTCATCAACTCACGGTTCATCCCAACCAACGCGCA 56204 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 || |||| |||| |||||||||| |||||||||||||||| ||| || ||| || || Sbjct 56203 AGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACGGCGTCGCAGACGAT-TGACT 56145 Query 868939 GGGCACG-TCGGCCGAGGGCTT-GTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 868996 | || || ||| |||| || | || | ||||||||| ||||| || || ||| Sbjct 56144 TCACGCGCTCCTCCGTCAGCTTCGTCCTCAAG-AGCGTGTAGAGGAGGCAAGCGAAATCG 56086 Query 868997 CAGTGCAACCCT 869008 ||||| || ||| Sbjct 56085 CAGTGTAAGCCT 56074 >seq422 Length=101449 Score = 123 bits (136), Expect = 3e-22 Identities = 195/276 (71%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || ||||| || || ||||||||||| | |||| | | || Sbjct 44065 GAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGAGATCTGA 44124 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| | || ||||| ||||||||||| |||||||| Sbjct 44125 ACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGCGGCGAAG 44184 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCAGTGG 869809 || || || ||||| ||||| ||||| || ||||||||| | | || |||||| | Sbjct 44185 AAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTCCCAGTCG 44244 Query 869810 ACGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | || | | | || || || || ||||||||||||| || || ||||| ||||| Sbjct 44245 CGATTATCTTGAGAT-AGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTTTT 44303 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||||||||| || | || |||| ||||| Sbjct 44304 GTACATCTCCCATATCTGAGGATATTGGATTGGGAA 44339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106498274825770