Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq308 118 9e-22 seq3586 93.3 3e-14 >seq308 Length=205501 Score = 118 bits (130), Expect = 9e-22 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||||||||| ||||| | || ||||||||||||||| | ||| ||| || Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || || | | | || ||| |||||| ||||| ||||| | || ||| Sbjct 131331 GAC---ACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGAC 131275 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| ||||||||||| ||||||| | || | || |||||| Sbjct 131274 CAACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTAC 131215 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| || | || ||||| | | ||| |||| || Sbjct 131214 AACATCCAGAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGAGG 131165 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | ||||| |||||||| || | ||| |||| Sbjct 130935 ATGCAGATTTTTGTTAAGACCCTTACCGGAAAAACCATAACTTTGGAAGTGGAGAGCTCG 130876 Query 110333 GATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || |||| | | || || ||| || || ||||| ||||| | || ||| || Sbjct 130875 GACACAGTCGACAATGTGAAGACAAAA-ATCCAAGACAAGGAAGGGATCCCTCCGGACCA 130817 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || ||||||||||| ||||||| |||| | || |||||||| Sbjct 130816 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACTCTTGCTGATTACAA 130757 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || || || || || ||||| |||| Sbjct 130756 CATCCAGAAGGAGTCAACCCTGCACTTGGT 130727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || |||||||| || ||||||| |||||||| || | || ||| || | Sbjct 130707 ATGCAGATTTTTGTCAAGACCCTAACCGGAAAAACCATAACTTTGGAGGTTGAGAGCTCA 130648 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||||| | | || || |||||| ||||||||||| | || || || Sbjct 130647 -GACACTGTAGATAATGTGAAGGCAAAGATTCAAGACAAAGAAGGGATCCCACCAGACCA 130589 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | ||| ||||| ||||| ||||||| | || | || || ||||| Sbjct 130588 ACAGAGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGTACTCTTGCAGACTACAA 130529 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| |||||||| || || Sbjct 130528 CATCCAAAAAGAGTCGAC 130511 >seq3586 Length=17470 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||||||| |||| || |||||||||||| |||| ||| || | Sbjct 5993 ATGCAGATCTTTGTCAAAACTCTAACAGGGAAAACCATTACCCTCGAGGTTGAGAGCTCA 6052 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || ||||| || ||||| || | || ||| || Sbjct 6053 -GACACAATCGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 6111 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | || || |||||||| ||||||| | ||| |||| || ||||| Sbjct 6112 GCAGAGGCTTATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAA 6171 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| || || ||||| || | ||| | ||||| Sbjct 6172 CATCCAGAAGGAATCAACCCTTCACCTTGTGTT 6204 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 |||||| | || || ||||| | || ||||| ||||| || |||| || |||| || Sbjct 5309 ATGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGATGTCGAGAGCTCT 5368 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| ||| | | || || |||||| || || |||||| | || |||| Sbjct 5369 GA---TACCATCGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGAT 5425 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| | || | || || |||||||| || |||| | | || |||| |||||| Sbjct 5426 CAGCAAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTAC 5485 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || |||||||| || | ||| |||| Sbjct 5486 AACATCCAGAAAGAATCAACCCTCCACTTGGT 5517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412802303930330