Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq144 123 4e-22 seq422 95.1 2e-13 >seq144 Length=115930 Score = 123 bits (136), Expect = 4e-22 Identities = 225/327 (69%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| |||||||||||| ||| | || |||||||| || || ||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||||| || || ||||| ||||| || || ||| || || Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| || || || || || | || || || |||||| ||||||||||| Sbjct 55956 GCTACGATTCGTTCAGCGAAGGT-TTGAGATCC-----GTCGATCCAAGTCATCGCCCAC 55903 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||| || ||| || | || | || || || ||||| ||||| || || |||| Sbjct 55902 TGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGATGATCTCTCTCT 55843 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || |||| ||| || |||| ||||| || |||| || || || || || Sbjct 55842 TTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACATCTCGGAATGAATATTCTCA 55783 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 55782 ATCGCGATCTGGAATCCGTAGAAAGCA 55756 Score = 87.8 bits (96), Expect = 3e-11 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||| || || |||| |||||||| | |||||||| ||||| || | Sbjct 56365 CTCGAAGAAGTTCGTTTTACCCTGAAGCGAGATAAGTTCCATCCAATCAAACGGATTAGT 56306 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| ||| || |||| |||| || ||| || | || || || || |||| Sbjct 56305 CACACCGTACACCTTACCGTACCCAAGCGCACCCAAA-AGTCTATCCGCAACAAACTCAA 56247 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 | ||||| | ||| | | |||||| || | | ||| || |||| |||| | Sbjct 56246 TATACTGACTCATCAACTCACGGTTCATCCCAACCAACGCGCAAGGAAGCGCGTCGCACA 56187 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGAC 794162 |||||||| |||||||||||||||| ||| || ||| || || | || || || | Sbjct 56186 CAAACTCTCTCTCGATCTCGACGGCGTCGCAGACGAT-TGACTTCACGCGCTCCTCCGTC 56128 Query 794163 GGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATG 794209 |||| ||| | || | ||||||||| ||||| || || ||||| || Sbjct 56127 AGCTTCGTCCTCAAG-AGCGTGTAGAGGAGGCAAGCGAAATCGCAGTG 56081 >seq422 Length=101449 Score = 95.1 bits (104), Expect = 2e-13 Identities = 219/326 (67%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||||||| | ||||| ||||||| |||| | || || ||||| | || || | Sbjct 43785 ACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTA-AGTCCAGGCATTAAACCTCGTT 43843 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| | ||| || || | ||| || || || ||||| ||||| || || ||| |||| Sbjct 43844 TCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCAA 43903 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | |||| || || || || | | || || || |||||| |||||||||| Sbjct 43904 AAGCCACGATTCGTTCAGCGAAGCTTTG-AGATCC-----GTCGATCCATTTCATCGCCC 43957 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | ||| || ||| | || | || | || || || ||||| ||||| || || ||| Sbjct 43958 ATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGCGCGGAAGAGATGATCTCTCT 44017 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || |||| || || |||| ||||| || |||| ||||| || || | Sbjct 44018 CTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAGTGAATATTCT 44077 Query 794639 CGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||| || || || |||||| Sbjct 44078 CAATCGCGATTTGAAATCCGTAAAAG 44103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915415614678590