Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3586 120 2e-22 seq275 114 8e-21 seq863 113 3e-20 seq2666 95.1 8e-15 seq516 95.1 8e-15 >seq3586 Length=17470 Score = 120 bits (132), Expect = 2e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 5976 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCC 5917 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| |||| ||||||||| | || | || |||||||| Sbjct 5916 TCAAGCTGCTTACCAGCGAAGATGAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 5857 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || ||||||| || | |||||| || | || || Sbjct 5856 TGAATCTTAGCCTTGAC--AT--TATCGATAGTGTCTGAGCTCTCGACCTCCAACGTAAT 5801 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || ||||||||||| ||||||||||||||| Sbjct 5800 GGTTTTGCCGGTGAGGGTCTTAACAAAGATCTGCATG 5764 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| |||||| || ||||| ||||| | || |||| |||| Sbjct 5748 AGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGTGTGCGACCATCC 5689 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| |||| ||||| || | || | || |||||||| Sbjct 5688 TCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATACCTTCCTTGTCC 5629 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || |||| || ||| | |||||| || | || || Sbjct 5628 TGGATCTTAGCCTTGAC--AT--TATCAATAGTGTCAGAGCTCTCGACCTCCAAAGTGAT 5573 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || ||||||||||| |||||||||||||| Sbjct 5572 GGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 5537 >seq275 Length=143682 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || || || |||| ||| ||||||||||||||| ||||| | || | || | Sbjct 139315 CCTGAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTACGGCC 139256 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || || |||||||||||||||||||||| || ||||||||| | || | |||||||| Sbjct 139255 GTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGGGATACCCTCCTT 139196 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || |||||| | || | ||| | ||| || |||| || || Sbjct 139195 ATCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGAGTGAT 139136 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||| || || ||||| ||||| Sbjct 139135 AGTCTTTCCGGTTAGGGTTTTGACGAAGATTTGCAT 139100 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||||| ||| |||||||||||| || || || | | | | || |||| Sbjct 123430 CAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGACCATC 123371 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||||| | |||||||| | || | ||||| ||||| Sbjct 123370 CTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTC 123311 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| ||| | || | || | ||| || || | ||| ||||| Sbjct 123310 TTGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATGGT 123251 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 123250 CTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 123218 Score = 100 bits (110), Expect = 2e-16 Identities = 153/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| ||||||| ||| | || |||||| || ||||| ||||| | | |||| | Sbjct 123890 CCTGAGGACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGTGCGACC 123831 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || || || ||||| |||||||| || || |||||||| | || | || ||||| Sbjct 123830 ATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 123771 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || |||||| | || | ||| | ||| || |||| ||| || Sbjct 123770 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCAAGGGTGAT 123711 Query 34942 GGTCTTTCCCGT-GAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || || ||||| || ||||||||||| Sbjct 123710 GGTCTTTCCGGTCAAGAGTCTTCACGAAGATCTGCAT 123674 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| || ||||||||| ||||| ||||| | | | || | || Sbjct 139540 CAAGACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCGTC 139481 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||||||||||||||||| || |||||||| | || | ||||||||||| Sbjct 139480 CTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC 139421 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| ||| | || | ||| ||| || || | || || || Sbjct 139420 TTGGATTTTAGCTTTCACGTTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATAGT 139361 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || | |||||| || ||||| ||||| Sbjct 139360 CTTTCCGGTCAAGGTCTTAACGAAGATTTGCAT 139328 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| |||| ||| ||||||||| || || || || | | | | || |||| Sbjct 139768 CAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGACCATC 139709 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||||| | |||||||| | || | ||||| ||||| Sbjct 139708 CTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTTGTC 139649 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| ||| | || | ||| | ||| || || | ||| ||||| Sbjct 139648 TTGGATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGT 139589 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 139588 CTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 139556 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||| | |||| |||||||| || || ||||| | | | || | Sbjct 139087 CCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCC 139028 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 || |||| ||||||||||||||||| || | ||||| || | || | || ||||| Sbjct 139027 GTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTT 138968 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || || ||| | || | ||| | || || || | ||| || Sbjct 138967 ATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGAT 138908 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| ||||| ||||| || ||||||||||| Sbjct 138907 GGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 138872 >seq863 Length=117140 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| || |||||||| ||||| ||||| | || | || | || Sbjct 77650 AGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCT 77709 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || |||||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 77710 TCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT 77769 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || | ||||| ||| || |||||| |||| ||| || Sbjct 77770 TGGATCTTCGCTTTGAC--AT--TGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGAT 77825 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| ||||| || || ||||||||||| Sbjct 77826 GGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 77861 >seq2666 Length=20083 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || ||||||| || || | ||||| || ||||||||||| | || || | |||| Sbjct 9297 AGCACAAGGTGAAGTGTTGAT-TCCTTTTGGATGTTATAGTCTGCAAGAGTGTGACCATC 9355 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || |||||||| |||| || |||||| | | ||| || ||||| Sbjct 9356 TTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCTGCTTGGATCCCTTCTTTGTC 9415 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT-TCATTGGCCTCGACATCAACGGTTATGG 34943 || || || ||||| || | || | ||| | ||| || || | |||||||| Sbjct 9416 GTGAATCTTGGCCTTGAC-ATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTTATGG 9474 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || ||||| || ||||| ||||||||| Sbjct 9475 TTTTGCCAGTTAGGGTTTTCACAAAAATCTGCATG 9509 >seq516 Length=37039 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||||||||| || || | || |||| |||| Sbjct 10233 AGGACAAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCATCT 10292 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| || |||| ||| |||||| | || | ||| |||||||| Sbjct 10293 TCGAGCTGCTTGCCGGCGAATATGAGTCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCT 10352 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | || | || || || | |||||||| Sbjct 10353 TGGATCTTGGCCTTCACATTGTCAATGGTATCTGAGCTTTCAACCTCCAAAGTTATGGTT 10412 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || || |||||||| Sbjct 10413 TTACCGGTAAGGGTCTTGACGAATATCTGCAT 10444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325661799134390