Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3586 109 4e-19 seq308 91.5 1e-13 >seq3586 Length=17470 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||||||| ||||||| |||||||||||| |||| ||| ||| Sbjct 5993 ATGCAGATCTTTGTCAAAACTCTAACAGGGAAAACCATTACCCTCGAGGTTGAGAGCTCA 6052 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| |||||||| || | || ||| || Sbjct 6053 -GACACAATCGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 6111 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || |||||||| ||||| | ||| |||| |||||||| Sbjct 6112 GCAGAGGCTTATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAA 6171 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || ||||| || || | ||| | |||||| Sbjct 6172 CATCCAGAAGGAATCAACCCTTCACCTTGTGTTG 6205 >seq308 Length=205501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || | || || |||||||| || | ||| |||| ||| | Sbjct 130935 ATGCAGATTTTTGTTAAGACCCTTACCGGAAAAACCATAACTTTGGAAGTGGAGAGCTCG 130876 Query 107615 CGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || |||| | | || || |||||| || || || ||||| | || ||| | Sbjct 130875 -GACACAGTCGACAATGTGAAGACAAAA-ATCCAAGACAAGGAAGGGATCCCTCCGGACC 130818 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | |||||||| || | || ||||||||||| ||||| | ||| | || || |||| Sbjct 130817 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGAACTCTTGCTGATTACA 130758 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || |||||||| || ||||| |||| Sbjct 130757 ACATCCAGAAGGAGTCAACCCTGCACTTGGT 130727 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || ||||||||||||||| | ||| ||| ||| Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || || | | | || ||| |||||| || || ||||| | || ||| || Sbjct 131331 -GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCA 131273 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | ||| ||||||||||| ||||| | || | || || ||||| Sbjct 131272 ACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAA 131213 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || || || || | || ||||| Sbjct 131212 CATCCAGAAAGAATCAACCCTTCATTTGGTG 131182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398838833161090