Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3586 91.5 2e-13 seq683 84.2 3e-11 >seq3586 Length=17470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| | ||| | |||||| | || || || || || ||| | ||||| || | Sbjct 5310 TGCAAGTTTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGATGTCGAGAGCTCTG 5369 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || || || || ||| ||||||||||| || ||||| | Sbjct 5370 ATACCATCGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCGGATCAGC 5429 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || || || || ||||| |||| ||| | || || | ||||| || | Sbjct 5430 AAAGGTTGATCTTCGCCGGAAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAACA 5489 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || |||| || || | ||||||||||| |||| Sbjct 5490 TCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGATTAAGAGGTGGTA 5537 >seq683 Length=32930 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| || || ||||| |||||||| || | || ||||| |||||||||||||| ||| Sbjct 24511 AAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAAGAT 24570 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATT 146242 | |||| ||| | ||||| || || || ||||| || || || || || || || Sbjct 24571 GGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTT 24626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786089650505200