Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq317 143 3e-29 seq1269 102 9e-17 seq1129 86.0 7e-12 >seq317 Length=114279 Score = 143 bits (158), Expect = 3e-29 Identities = 184/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 158180 ACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 158239 || ||||| ||||| || || |||||||||| || ||| | || |||||||| Sbjct 8556 ACACCTGAAGGAGAGCAAGAGATTGAGTGTGAAGAAGACGTTTACGTCCTCGACGCAGCT 8615 Query 158240 GAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCA 158299 || ||||| ||| |||| | ||||| || ||||||||| ||||||| | ||||| Sbjct 8616 GAGGAAGCTGGAATTGACTTGCCTTACTCATGCCGTGCTGGTTCTTGCTCAACCTGTGCT 8675 Query 158300 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAA 158359 |||||| ||| ||||| |||||||||||| ||| ||| ||||| || ||||| || Sbjct 8676 GGTAAAGTTGAGTCTGGTACTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAG 8735 Query 158360 ATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTT 158419 || | | ||||| |||||| || |||| || ||||| || |||||| ||| || Sbjct 8736 ATTGGTGAAGGATATGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTTGTCATTAGA 8795 Query 158420 ACTGATCAAGAGGA 158433 ||| | ||||| || Sbjct 8796 ACTCACCAAGAAGA 8809 >seq1269 Length=73620 Score = 102 bits (112), Expect = 9e-17 Identities = 252/356 (71%), Gaps = 35/356 (10%) Strand=Plus/Minus Query 157717 TTCGGTC-AAGAAGAAGAGA-CGTACAACATC-GTT--GCTGCACACGGTTACTTC-GGT 157770 ||||||| |||||||||||| | |||||||| ||| ||||| || ||||| || || Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 157771 CGCCTGA--TCTTCCAATACGCTTCATTCAACAACAGCAGAAG--TCTTCAC--TTCTTC 157824 || ||| |||||||||| ||| |||| ||||| | |||| || |||||| Sbjct 6511 CGATTGACATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTC 6452 Query 157825 -CTCGCCG-CATGGCCTGTT-GTCGGC-ATCTG-GTTCACT-GCACTGGGCGTAAGCACC 157878 || | || | ||||| | | || || || || ||| ||| || | || || | | | Sbjct 6451 TCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGC 6392 Query 157879 -ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCC-------TTGATGGTC 157930 ||||| |||||||| || |||||||| ||||||| | | | ||||| | | Sbjct 6391 TATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG-C 6333 Query 157931 AGGGTCGTGTG--TTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGG-TATGG 157987 | || ||||| ||||| || ||||| ||| | | ||||| | | ||||| ||||| Sbjct 6332 AAGGACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGG 6273 Query 157988 AAGTTATG-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTGGATCTTGCTGCTG 158038 |||||||| ||||| |||| |||| | || ||||||||||| || || ||||||| Sbjct 6272 AAGTTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTG 6217 >seq1129 Length=53819 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 158212 AGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAAC-TACTCTT 158270 ||| || |||||||| | || ||||| ||||| ||||||||||| ||| | ||||||| Sbjct 9098 AGACGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGA-GTTACCTTACTCTT 9040 Query 158271 GTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGA 158330 | | |||||||| || || | || || ||||| ||||| | || | ||||| ||| Sbjct 9039 GCAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATTGTTACGGGCAACGTTGACCAGT 8980 Query 158331 GTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCA-GGATTTGTTCTTACGTGTGTA 158389 ||| ||||| || |||||| | | | | | || | || | ||| | || ||||| Sbjct 8979 CGGATGGTTCGTTTCTCGACGAT-AGCCACTTGGAGAATGGTTATGTCTTGACTTGTGTG 8921 Query 158390 GCATATCCAACATCTGATTGTGT 158412 || || ||| ||||| ||||| Sbjct 8920 GCTTACCCACAGTCTGACTGTGT 8898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545220367664800