Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq422 143 6e-29 seq144 93.3 1e-13 >seq422 Length=101449 Score = 143 bits (158), Expect = 6e-29 Identities = 326/482 (68%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT-CTACAAG 131859 ||||||||| ||||||| || |||||||| | | ||| | | || || || | | Sbjct 43970 AAGAAAGCACAATGGGCGATGAAATGGATCGACG--GAT--CTCAAAGCTTCGCTGAACG 43915 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT-GCTTTCTGTGCTATCT 131918 | | || ||||||||||| ||||||||||| ||||| || ||| ||||| ||| |||| | Sbjct 43914 AATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTT-TGTTCTATTT 43856 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 | ||| | ||||| || || || ||||||||||| | || ||||| || | ||||| | Sbjct 43855 TCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAACGAACTGATCTCAA 43796 Query 131979 GAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCT--GAT-- 132034 |||| |||| | ||| ||| || ||| || || ||||| | | || ||| Sbjct 43795 GAGACGAAGGTCTTCATTGTGATTTCGCTTGTTTGATTTATAG----TCTTCTTCGATTC 43740 Query 132035 AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAG 132094 || ||| |||| || | | ||| | || | | || || ||||| || |||| ||| Sbjct 43739 AAGCTTAGTGAAGATCGTGTGAAATCAATTGTTCGTGATGCGGTTGAGATTGAGAGAGAG 43680 Query 132095 TTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAG 132154 ||| | || || | |||||| ||| |||||||||| ||| | |||| | Sbjct 43679 TTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAA 43620 Query 132155 TACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAAC 132214 || ||||| || || || ||||| ||| | | | ||| || ||| | ||| Sbjct 43619 TATATTGATTTTGTAGCGGATCGGTTATTGGGTGAGCCTGGGTACGGTAAGGTGTATGGT 43560 Query 132215 ACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTC 132274 || || | | |||||||||| ||||||||| |||||||||| || ||||| Sbjct 43559 GTGAGTAATCCATTTGATTGGATGGAGTTGATTTCGCTTCAAGGTAAAACTAATTTCTTT 43500 Query 132275 GA 132276 || Sbjct 43499 GA 43498 >seq144 Length=115930 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 |||||||| ||||| ||||||||||| ||||| || ||| ||||| | ||||| ||| Sbjct 55952 GTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCCATCTTCTGG 56011 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 |||||||| || ||| | |||||||| | | || || || |||| ||||| |||| Sbjct 56012 CTTAAGAAACGAGGACTCATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCGAGAC 56071 Query 131984 GAAG 131987 |||| Sbjct 56072 GAAG 56075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186694040835410