Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 147 1e-30 seq863 107 1e-18 seq308 93.3 3e-14 seq275 82.4 5e-11 >seq1 Length=111110 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||| | ||||||||| || || |||||| || ||||||||||||| Sbjct 60649 CACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCGG 60590 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | | |||| |||| ||| || ||||| || |||| |||||||||||| | | Sbjct 60589 CGAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGTG 60530 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||| |||| ||| | ||||| |||||| Sbjct 60529 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTGTCGATTGTGTCCGATGATTCA 60471 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 60470 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 60421 >seq863 Length=117140 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| ||| || || || || || |||||||| |||| | Sbjct 77635 CCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 77694 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||||| ||||| |||||||| |||||||| || | || Sbjct 77695 AGAGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 77754 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| ||| | ||| ||| | |||||| || || || Sbjct 77755 ATTCCCTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCAGAGGACTCGAC 77813 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| |||| ||||| || ||||||||||| Sbjct 77814 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 77861 >seq308 Length=205501 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||||||||| || || ||||| || ||||||||||||| Sbjct 131164 ACCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGC 131223 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||||| || ||||| || | | ||| || || | || Sbjct 131224 AAGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGG 131283 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || | || ||||| ||| |||||||| ||| | Sbjct 131284 GATTCCTTCCTTGTCTTGAATCTT-AGCTTTAACATTGTCAACGGTGTCAGAGCT---CT 131339 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 131340 CAACTTCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 >seq275 Length=143682 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| || || ||| || || || |||||||||| | || || | Sbjct 139771 ACGCAAGACCAAATGAAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGACC 139712 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | || |||||||| || ||||| | |||||| || | || | ||| ||||| Sbjct 139711 ATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 139652 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATTCCACGTCAACCG 33709 ||| || || ||||| | | |||| |||||| ||| ||||| || | | Sbjct 139651 GTCTTGGATCTTGGCTTTCA-CGTTGTCAATGGTGTCAGAGCTC---TCCACCTCGAGGG 139596 Query 33710 TGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||| || || || || || |||||||||||| Sbjct 139595 TAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 139555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328672712515200