Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1269 120 9e-23 >seq1269 Length=73620 Score = 120 bits (132), Expect = 9e-23 Identities = 323/465 (69%), Gaps = 43/465 (9%) Strand=Plus/Minus Query 20065 TGGTG-TATTCGGTGGGTCACTA-TTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCG 20122 ||||| ||||||| | | ||| || ||||| ||||| ||||| ||| || | || | Sbjct 6685 TGGTGGTATTCGGCGCTGCCCTACTTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAG 6626 Query 20123 CTTGTGC--GTGAGACTACTGAACAGGAAAGTCAGAACT-ATGGTTA--CAAGTTTGGG- 20176 |||| | || || || ||| | ||| | || | ||||| | || || || Sbjct 6625 TTTGTATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGT 6566 Query 20177 -CAAGAAGAAGAGACCT-ATAACATCG--TAGCC-GCTCATGGTTACTTT-GGACGTTTG 20230 ||||||||||||| || | ||||| ||| | ||||||||||| ||| || || ||| Sbjct 6565 CCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTG 6506 Query 20231 A--TCTTCCAATACGCTTCTTTCAACAATAGC----CGTTCTCTACACTTCTTCCTT--G 20282 | |||||||||| ||| ||||| ||| | | |||||| |||| |||||| | | Sbjct 6505 ACATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 20283 CTGCCTGGCC-GGTGGTAGGG-ATTTG-GTTCGCT-GCCTTGGGCGTTTCTA-CAATGGC 20337 | || ||||| ||| |||||| ||||| ||| || || || || | | || | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 20338 GTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTC-------TCGACAACAATGGTC 20390 || || || || |||||||| || |||| | || | || | ||| || | Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAA-GGAC 6327 Query 20391 GTGTCA-TTGA-TACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGT-TTGAGGTGA 20447 |||| | |||| |||||||||||| ||| | || |||| ||| || |||| | || || | Sbjct 6326 GTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTA 6267 Query 20448 T-GCATGAACGGA-ATGCTC---ATAACTTCCCACTTGACCTTGC 20487 | ||||||||| | | |||| ||||||||||| ||||| || Sbjct 6266 TGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGC 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148814997058980