Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1269 113 1e-20 >seq1269 Length=73620 Score = 113 bits (124), Expect = 1e-20 Identities = 244/345 (71%), Gaps = 34/345 (10%) Strand=Plus/Minus Query 29305 CAAGAAGAAGAGA-CTTATAACATCG--TAGCC-GCTCACGGTTACTTT-GGACGTTTGA 29359 ||||||||||||| |||| ||||| ||| | ||||| ||||| ||| || || |||| Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 29360 --TCTTCCAATATGCTTCTTTCAATAATAGC----CGTTCTCTACACTTCTTCCTT--GC 29411 |||||||||||||| ||||| || | | |||||| |||| |||||| | || Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 29412 TGCCTGGCC-GGTGGTAGGG-ATTTG-GTTCGCT-GCCTTGGGCGTTTCTA-CAATGGCG 29466 || ||||| ||| |||||| ||||| ||| || || || || | | || | ||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 29467 TTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTC-------TCGACAACAATGGTCG 29519 || || || || ||||| || || |||| | || | || | ||| || || Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAA-GGACG 6326 Query 29520 TGTCATT--AATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCT-TTGAAGTAAT 29576 ||| | | ||||||||||||||| || | || || | |||||| || | | ||||| || Sbjct 6325 TGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTAT 6266 Query 29577 -GCATGAGCGTA-ATGCTC---ATAACTTCCCACTTGATCTGGCT 29616 |||||| |||| | |||| ||||||||||| || || ||| Sbjct 6265 GGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCT 6221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146651997682260