Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq1269 114 4e-21 >seq1269 Length=73620 Score = 114 bits (126), Expect = 4e-21 Identities = 316/459 (69%), Gaps = 43/459 (9%) Strand=Plus/Minus Query 19284 TGGTG-TGTTCGGCGGGTCACTA-TTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCG 19341 ||||| | ||||||| | ||| |||||||| ||||| ||||| ||| || | || | Sbjct 6685 TGGTGGTATTCGGCGCTGCCCTACTTTAGTGCTATGCATGGTTCCTTTGGTAACTTCTAG 6626 Query 19342 CTTGTGC--GTGAAACTACTGAAGAGGTATCTCAGAACT-ATGGCTA--CAAGTTTGGG- 19395 |||| | ||||| || ||| | | |||| || | || || | || || || Sbjct 6625 TTTGTATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAAGGTTAGGCCAGATTCGGT 6566 Query 19396 -CAAGAAGAAGAGA-CTTATAACATT-GTT--GCTGCTCATGGGTATTTTGGTCGGCTT- 19449 ||||||||||||| |||| |||||| ||| ||||||||||| |||||| | | | || Sbjct 6565 CCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTG 6506 Query 19450 --ATTTTCCAGTACGCATCCTTCAACAATAGC----CGTTCTCTACATTTCTTTTT--GG 19501 || ||||| || || |||| ||| | | |||||| |||||||||| | || Sbjct 6505 ACATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 19502 CTGCTTGGCCTG-TGGTTGGC-ATTTG-GTTTGCCGCCCTTGGGGTAA-GCACC-ATGGC 19556 | |||||||| | | || || ||||| |||| | | || || | | | | | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 19557 ATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTC-------TTGACAACAATGGTC 19609 |||||| | ||||| || || || |||| | || |||| | ||| || | Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAA-GGAC 6327 Query 19610 GTGTCA-TTGA-TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTG--AGGTA 19665 |||| | |||| |||||||||||| ||| | || |||| |||||| || | || || || Sbjct 6326 GTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTA 6267 Query 19666 ATGCACGAACGTA-ATGCTC---ATAACTTCCCACTTGA 19700 ||| ||||||| | |||| ||||||||||| || Sbjct 6266 TGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGA 6228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141135709330980