Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq275 95.1 1e-14 seq308 91.5 1e-13 >seq275 Length=143682 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||||| |||||||||||||| ||| || ||| || | Sbjct 123660 CGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCCAAGGTGCGACCA 123601 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | |||| |||||||| || || ||||| || ||||| ||| Sbjct 123600 TCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTA 123541 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | ||| || | ||| ||||| | || | Sbjct 123540 TCCTGGATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACTTCAAGGGTGATT 123481 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || ||||| || | ||| || ||||| Sbjct 123480 GTCTTCCCGGTGAGAGTCTTCACGAATATTTGCAT 123446 >seq308 Length=205501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| ||||||||||| | ||||| ||| || ||||| ||||| | | Sbjct 130514 GACTCTTTTTGGATGTTGTAGTCTGCAAGAGTACGACCATCCTCAAGCTGCTTACCAGCA 130573 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||| ||||| || || |||||||| || ||| ||| |||| Sbjct 130574 AAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAATCTTTGCCTTCACA 130633 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || ||||| || | ||| || || | || | ||||| || || || || || Sbjct 130634 TTATCTACAGTGTCTGAGCTCTCAACCTCCAAAGTTATGGTTTTTCCGGTTAGGGTCTTG 130693 Query 132110 ATGAAAATCTGCATG--ACTTATTAGA 132134 | |||||||||||| || | ||||| Sbjct 130694 ACAAAAATCTGCATGCCACCTCTTAGA 130720 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | |||| ||||| || |||||||| ||| | || || ||| || Sbjct 131183 ACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCAAGAGTGCGACCATCCTCA 131242 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | | |||| || | |||||| || ||||| || ||||| || || | Sbjct 131243 AGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATTCCTTCCTTGTCTTGA 131302 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || || || || | ||| ||||| | || | ||||| Sbjct 131303 ATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAACTTCTAGGGTAATGGTTTTG 131362 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | || || |||||| Sbjct 131363 CCAGTGAGGGTTTTCACAAATATTTGCATG 131392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476564670831600