Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq683 84.2 2e-11 seq308 84.2 2e-11 seq2666 82.4 6e-11 >seq683 Length=32930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || |||||||| ||| | || | ||| || |||||||||||| Sbjct 24508 GACAAAGAGGGGATACCACCAGATCAACAGAGGTTGATATTTGCTGGTAAACAATTAGAA 24567 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| | | ||||||||||| || ||||| |||||| | || || || ||| Sbjct 24568 GATGGTCGAACTTTAGCTGATTACAACATTCAGAAAGAGTCTACAATTCACTTGGTTTTG 24627 Query 106473 AGGTTACGAGGAGG 106486 ||| | |||| || Sbjct 24628 AGGCTTAGAGGTGG 24641 >seq308 Length=205501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| | |||||||| ||||||||| | ||| || | Sbjct 131391 ATGCAAATATTTGTGAAAACCCTCACTGGCAAAACCATTACCCTAGAAGTTGAGAGCTCT 131332 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | |||| | | || ||| || ||| ||||| ||||| | || || ||| Sbjct 131331 GACACCGTTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAA 131272 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || || || | ||| || ||||| | || ||| | ||| | | |||||||||| Sbjct 131271 CAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCCGATTACAAC 131212 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || |||||||| || || ||||| || Sbjct 131211 ATCCAGAAAGAATCAACCCTTCATTTGGT 131183 >seq2666 Length=20083 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| ||||| | |||||||| ||||| ||| | ||| || | Sbjct 9508 ATGCAGATTTTTGTGAAAACCCTAACTGGCAAAACCATAACCCTAGAAGTTGAGAGCTCT 9449 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | |||| | | || || || ||| |||||||||||| | | | || ||| Sbjct 9448 GACACCGTTGACAATGTCAAGGCCAAGATTCACGACAAAGAAGGGATCCAAGCAGACCAA 9389 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||| | || ||||| ||| | |||||| | | ||| | | || || ||| Sbjct 9388 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAAGATGGTCACACTCTTGCAGACTATAAC 9329 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || ||||| ||||| ||||| || Sbjct 9328 ATCCAAAAGGAATCAACACTTCA 9306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402291304508480