Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq144 192 8e-43 seq422 168 1e-35 >seq144 Length=115930 Score = 192 bits (212), Expect = 8e-43 Identities = 384/562 (68%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | ||||| | ||| ||||| ||||| | |||| |||| || || || Sbjct 55524 TGTTTCCGATTCACTACCCACAGATCTGGGAGATGTATAAGAAAG-CCGAAGCATCGTTC 55582 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGTCCACTGGGTGTCGCTGAGCG 1455870 ||||||||||| || ||||| || ||| ||| | | |||| | || | || Sbjct 55583 TGGACCGCCGAAGAAGTCGATCTATCACAAGACGGACG--CGATTGGGAGAATCTAAACG 55640 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| || || || |||||||| ||||||||||| ||| |||||||| || || ||| Sbjct 55641 ACGGTGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCCGCATCAGACGGTATC 55699 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || || || ||| ||| || ||| | | ||||| ||| Sbjct 55700 GTTTTAGAGAATCTCGCTTCACGATTCATGTCAGATGTTCAAGTCTCGGAGGCGCGTGCT 55759 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||||||||| || || || || || || || | || ||||| || Sbjct 55760 TTCTACGGATTCCAGATCGCGATTGAGAATATTCATTCCGAGATGTATAGTCTCCTTCTC 55819 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || ||| |||| || |||| || || ||||| ||||| || || || | Sbjct 55820 GATACGTACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCGATTGAAACCATT 55879 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | || ||| || || | |||||||||| |||||| || || ||| | Sbjct 55880 CCTTGCGTCGCGAAGAAAGCACAGTGGGCGATGACTTGGATCGAC-----GGATCTCAAA 55934 Query 1456171 ACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 ||| || || || |||| | || || |||| || || ||||| ||||| || || | Sbjct 55935 CCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCT 55994 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 ||||| ||||||| ||||| ||||| || || |||||||| ||| || ||| ||| Sbjct 55995 TCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGT-TTAACCTTCTCTAAC 56053 Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311 ||||| ||| ||| ||||||| Sbjct 56054 GAATTGATCTCTCGAGACGAAG 56075 >seq422 Length=101449 Score = 168 bits (186), Expect = 1e-35 Identities = 357/528 (68%), Gaps = 11/528 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| || | | ||||||||| |||||| |||||| |||| || || || Sbjct 44341 TGTTCCCAATCCAATATCCTCAGATATGGGAGATGTACAAAAAAG-CCGAAGCTTCATTC 44283 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGC 1455869 ||||||||||| || ||||| || || | | |||||| || | | | Sbjct 44282 TGGACCGCCGAAGAAGTCGATCTATCTCAAGATAATCGCGACTGGGAAAATTCCTTAAAC 44223 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||||||| || || |||||||| ||||| |||||||| || |||||| || ||||| Sbjct 44222 GACGACGAACGACACTTCATCAAACACGTACTCGCCTTCTT-CGCCGCATCAGACGGCAT 44164 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||| || | ||| || ||| || || || | | ||||| ||| Sbjct 44163 CGTTTTAGAGAATCTATCAACCCGATTCATGTCCGATGTTCAGATCTCCGAGGCTCGTGC 44104 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 |||||||| || || ||||| || || || || |||||||| | || ||||| | Sbjct 44103 CTTTTACGGATTTCAAATCGCGATTGAGAATATTCACTCTGAGATGTATAGTCTCCTTCT 44044 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || || |||| || |||| || || ||||| ||||| || || || | Sbjct 44043 CGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATTGAAACCAT 43984 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | || | ||| || || | ||||||||||| |||||| || || ||| | Sbjct 43983 TCCTTGTGTAACGAAGAAAGCACAATGGGCGATGAAATGGATCGAC-----GGATCTCAA 43929 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||| || || || |||| | ||||| |||| || || ||||| ||||| || || Sbjct 43928 AGCTTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGC 43869 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 || || | || || ||| | ||||| || || | ||||| || ||| Sbjct 43868 TTTTGTTCTATTTTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTT 43821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177057911145220