Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq504 140 4e-28 seq1269 120 3e-22 seq317 102 9e-17 >seq504 Length=87311 Score = 140 bits (154), Expect = 4e-28 Identities = 513/759 (68%), Gaps = 81/759 (11%) Strand=Plus/Minus Query 159685 CACGGTGCATTCGCTCTCATAGGTTTT--ATGCTA-CGG--CAATTT-GAAATTGCTCGT 159738 ||||| | ||||| | |||||| || ||| || ||| |||||| ||| |||||| | Sbjct 51402 CACGGCCCTTTCGCATTAATAGGTGTTTCATGTTATCGGTTCAATTTTGAACTTGCTCAT 51343 Query 159739 CTAGTTGGTATCCGTCCTTAC-AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 || | || ||||| ||||| || || ||||||||||| ||||||| |||||| Sbjct 51342 CTGCCTCAATTCGCACCTTATTAATGCAATCGCATTCTCTGGTCCAATTGCTG-TTTTGT 51284 Query 159798 CAGCGTATTCC---TTATCTATCCAC--TGGGTCAGTCTTCATGGTTCTTTGCACCTAGT 159852 || |||| | || ||||||| | ||||| ||| ||||||||| |||| | Sbjct 51283 TTCTGTCTTCCGAGTAATTTATCCACGTTAGGTCAATCT--GGTGTTCTTTGCGCCTATT 51226 Query 159853 TTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTC--AGGGTTTCCACAACTGGA 159910 || | | || ||| ||||| | | || ||| ||| || || || |||| Sbjct 51225 TT--------TACCTATATTTCGATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGA 51174 Query 159911 CCCTCAACCCCTTCCATATGATGGG-AGTTGCTGGTATACT--AGGTGGAGCACTGTTGT 159967 | | ||||| || ||||||||||| ||| || ||| |||| || | || ||| | | Sbjct 51173 CATTGAACCCATTTCATATGATGGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTAT 51114 Query 159968 G-TGCAATCCATGGTGCTACT-GTAGAGAACACATTGTTTGAAGATGGAGAACAA----- 160020 | || || |||||||||||| ||||| || || || ||||||||||| | | Sbjct 51113 GCGGCTATTCATGGTGCTACTGGTAGAAAATACTTTATTTGAAGATGGTGGGGGATTTTG 51054 Query 160021 --GC--AAACACATT-TAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTA-TTCTATG 160074 || | | ||||| || ||| | || ||||||| ||||| ||||| ||| ||| Sbjct 51053 TGGCAGAGATACATTCCGCTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTTCAATG 50994 Query 160075 GTC-ACTGC--AAACCGCTTCTGGTCGCAGATC--TTCGGTGTTGCATTTTCTAA--CAA 160127 ||| || || | |||||| ||||| || ||| || || ||||| || || || || Sbjct 50993 GTCAACCGCTACACCCGCTTTTGGTCACAAATCTTTTGGGGGTTGCTTTATCCAATTTAA 50934 Query 160128 GCGGTGGCTTCA----TTTTTTCATGTTGTTTG--TGCC-TGT-TATGGGTCTATG-GA- 160177 || |||||||| | || ||||||| |||| | || || | ||| |||| || Sbjct 50933 ACGTTGGCTTCACATTTCTTGTCATGTTATTTGCCTACCGCGTAAACTGGTTTATGTGAT 50874 Query 160178 CATCCTCTATTGGCATTATTGGTCTTGC-TTTCAACCTTCGTGCTTACGATTTCGTGAG- 160235 |||||| |||| | | ||||| || ||| | ||| || | || || ||||| | Sbjct 50873 GATCCTC--TTGGAGTAGTCGGTCTAGCTTTTGAGCCTACG-GACTATGACTTCGTTTGC 50817 Query 160236 TCAGGAGATT---AGAGCAGCAGAAGATCCTGAATTT--GAGACC-TTCTA-CACCAAGA 160288 ||||| ||| | |||| |||||||| |||||| |||||| ||||| || || | Sbjct 50816 CCAGGAAATTCCGCGCCCAGCGGAAGATCCGGAATTTGGGAGACCTTTCTATTACTAACA 50757 Query 160289 A--CATCCTATTGA-ATGAA--GGACTTCGTGCTT-GGATGGCACCTGCTGATCAACCAC 160342 | || || || | | ||| || ||||||||| ||||||| || ||||| || | Sbjct 50756 AAGTATTCTTTTAACACGAAAGGGTATTCGTGCTTGGGATGGCGGCTCAAGATCAGCCTC 50697 Query 160343 AT--GAAAACTTTATCTTCCCT---GAGGAAGTACTACC 160376 || ||||| |||| |||||| | ||| || ||||| Sbjct 50696 ATAGCAAAACCTTATATTCCCTTTAGGGGAGGTTCTACC 50658 >seq1269 Length=73620 Score = 120 bits (132), Expect = 3e-22 Identities = 258/360 (72%), Gaps = 37/360 (10%) Strand=Plus/Minus Query 158342 TTCGGTC-AAGAAGAAGAGACCT-ACAACATC-GTT--GCAGCCCATGGCTACTTC-GGT 158395 ||||||| |||||||||||| || ||||||| ||| || || ||||| || || || Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 158396 CGTTTGA--TCTTCCAATACGCT----TCATTCAACAACTCC-CGTTCCTTGCACTTCTT 158448 || |||| |||||||||| ||| |||| |||||||||| ||||| || || ||||| Sbjct 6511 CGATTGACATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTT 6453 Query 158449 CCTT--GCTGCATGGCCTGTT-GTCGGC-ATCTG-GTTCACCGCCCTT-GGCGTGTCAAC 158502 | | || || ||||| | | || || || || ||| || | || || | | | Sbjct 6452 CTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAG 6393 Query 158503 C-ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCC-------TTGATGGT 158554 | ||||| |||||||| || |||||||| ||||||| | | | ||||| | Sbjct 6392 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG- 6334 Query 158555 CAGGGTCGTGTG--TTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGG-TATG 158611 || || ||||| ||||| || ||||| ||| | | ||||| | | ||||| |||| Sbjct 6333 CAAGGACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATG 6274 Query 158612 GAAGTTATG-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTGGATCTTGCTGCTGCTG 158666 ||||||||| ||||| |||| |||| | || ||||||||||| || || ||||||| || Sbjct 6273 GAAGTTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq317 Length=114279 Score = 102 bits (112), Expect = 9e-17 Identities = 172/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 158807 TGACGGCGATCAAGTTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGA 158866 ||| || || |||| ||| ||||||| || ||| | || ||||| || || || Sbjct 8561 TGAAGGAGAGCAAGAGATTGAGTGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGA 8620 Query 158867 GGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAA 158926 || ||| |||| | || || || ||||||||| | || || ||||||||||||| Sbjct 8621 AGCTGGAATTGACTTGCCTTACTCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAA 8680 Query 158927 ACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGC 158986 | ||| || |||||||| || || ||| ||| | |||||||| ||||||| Sbjct 8681 AGTTGAGTCTGGTACTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGG 8740 Query 158987 AGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGATTGTGTGGTCATGACTGA 159046 ||||||| | | || || |||| ||||||| ||||||||| ||| | | ||| | Sbjct 8741 TGAAGGATATGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTTGTCATTAGAACTCA 8800 Query 159047 GCAAGAGGA 159055 ||||| || Sbjct 8801 CCAAGAAGA 8809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572968058532000