Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1269 134 2e-26 seq317 111 2e-19 seq504 86.0 7e-12 seq1129 84.2 2e-11 >seq1269 Length=73620 Score = 134 bits (148), Expect = 2e-26 Identities = 262/359 (73%), Gaps = 35/359 (10%) Strand=Plus/Minus Query 160626 TTCGGTC-AAGAGGAAGAGACCT-ACAACATC-GTC--GCAGCCCATGGTTACTTC-GGT 160679 ||||||| |||| ||||||| || ||||||| || || || |||||||| || || Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 160680 CGTTTGA--TCTTCCAATATGCA----TCATTCAACAACTCC-CGTTCACTTCACTTCTT 160732 || |||| ||||||||||||| |||| |||||||||| ||||| | || ||||| Sbjct 6511 CGATTGACATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTT 6453 Query 160733 C-CT-GGCAGCATGGCCTG-TAGTCGGA-ATCTG-GTTCACT-GCTCTTGGTGTTAGCAC 160786 | || ||| || ||||| | |||| || || || ||| ||| ||| | ||| | | | Sbjct 6452 CTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAG 6393 Query 160787 C-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCC----TCGATGGT--C 160839 | ||||| |||||||| || |||||||| ||||||| | | | | | || | | Sbjct 6392 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGC 6333 Query 160840 AAGGTCGTGT--ACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGG-TATGG 160896 |||| ||||| | |||| || ||||| || | | || |||| | ||||| ||||| Sbjct 6332 AAGGACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGG 6273 Query 160897 AAGTTATG-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTCGACCTCGCTGCTGCTG 160950 |||||||| ||||| |||| |||| | || ||||||||||| ||||| ||||||| || Sbjct 6272 AAGTTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq317 Length=114279 Score = 111 bits (122), Expect = 2e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 161089 TGAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGA 161148 |||||| | |||| || | |||||| |||| ||| | | || ||||| || || Sbjct 8561 TGAAGGAGAGCAAGAGATTGAGTGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGA 8620 Query 161149 GGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAA 161208 || ||| |||| | || || || ||||||||| ||||||| ||||||| ||||| Sbjct 8621 AGCTGGAATTGACTTGCCTTACTCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAA 8680 Query 161209 AATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGA 161268 | || || ||||| || || |||||||||||| ||| | |||||||| ||||||| Sbjct 8681 AGTTGAGTCTGGTACTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGG 8740 Query 161269 ATCTGGATTCCTTTTGACATGTGTTGCATATCCTACTAGCGATTGTGTGATTCAAACTGA 161328 |||| || | || |||| || ||||||||| ||| ||| ||| |||| | Sbjct 8741 TGAAGGATATGTTCTCACTTGTGCGGCTTATCCTACTTCTGATGTTGTCATTAGAACTCA 8800 Query 161329 GCAAGAGGA 161337 ||||| || Sbjct 8801 CCAAGAAGA 8809 >seq504 Length=87311 Score = 86.0 bits (94), Expect = 7e-12 Identities = 186/266 (70%), Gaps = 23/266 (9%) Strand=Plus/Minus Query 162069 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC---TTATCTAC 162125 ||||| || || ||||||||||| ||||||| |||||| ||||||| | || || Sbjct 51320 AATGCAATCGCATTCTCTGGTCCAATTGCTG-TTTTGTTTCTGTCTTCCGAGTAATTTAT 51262 Query 162126 CCA--TTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTA 162183 ||| || ||||| || || ||| || || || | ||| | | || ||| Sbjct 51261 CCACGTTAGGTCAATCTGGT--GTTCTTTGCGCC-TATTTT-------TACCTATATTTC 51212 Query 162184 GATTCCT-GTTGTTTCTTCAAGG-ATTCCATAACTGGACCCTGAACCCCTTCCATATGAT 162241 ||||| | || ||| | ||||| || ||||| ||||| ||||||| || |||||||| Sbjct 51211 GATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGAT 51152 Query 162242 GGG-AGTTGCTGGTATACT--AGGTGGAGCACTTCTAT-CTGCTATTCACGGAGTCAC-A 162296 ||| ||| || ||| |||| || | || || |||| | |||||||| || | || Sbjct 51151 GGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTG 51092 Query 162297 GTTGAAAATACATTATACGAGGATGG 162322 || |||||||| |||| || ||||| Sbjct 51091 GTAGAAAATACTTTATTTGAAGATGG 51066 >seq1129 Length=53819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 161120 GACCAGTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAAC-TATTCTTGTCG 161178 ||||| ||||| || |||||||| ||||||||||||||||| ||| | || ||||| | Sbjct 9094 GACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGA-GTTACCTTACTCTTGCAG 9036 Query 161179 TGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGA 161238 |||||||| || || | || || ||||| ||| || | || | || |||||||| || Sbjct 9035 AGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATTGTTACGGGCAACGTTGACCAGTCGGA 8976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559449378422000