Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1269 104 3e-17 seq504 91.5 2e-13 >seq1269 Length=73620 Score = 104 bits (114), Expect = 3e-17 Identities = 248/346 (72%), Gaps = 37/346 (11%) Strand=Plus/Minus Query 175134 TTCGG-CCAAGAAGAAGAGACCT-ATAACATC-GT--GGCAGCCCATGGCTACTTC-GGT 175187 ||||| |||||||||||||| || | ||||| || ||| || ||||| || || || Sbjct 6571 TTCGGTCCAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGC 6512 Query 175188 CGTTTGA--TCTTCCAATACGCT----TCATTCAACAACTCA-CGCTCACTCCACTTCTT 175240 || |||| |||||||||| ||| |||| ||||||||| || || | || ||||| Sbjct 6511 CGATTGACATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTT 6453 Query 175241 CT-TAGCCG-CATGGCCAGTT-GT-GGGTATCTG-GTTCACC-GCACTTGGTGTTTCCA- 175293 || ||| || | ||||| | | || |||||| || ||| || || | ||| | | | Sbjct 6452 CTCTAGGCGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAG 6393 Query 175294 CAATGGCATTCAACCTCAATGGTTTCAACTTCAACC-----AGTC--TGTTATCGACGGA 175346 | ||||| |||||||| ||||||||||| ||||||| | || ||| | || | Sbjct 6392 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG- 6334 Query 175347 CAAGGTAGAGT--ATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGG-ATG 175403 ||||| | || |||||| || ||||| ||| || ||||| | | | |||||| ||| Sbjct 6333 CAAGGACGTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATG 6274 Query 175404 GAAGTAAT-GCATGAGAG-AAATGCAC--AC-AACTTCCCACTAGA 175444 ||||| || |||||| | | | || | || |||||||||||||| Sbjct 6273 GAAGTTATGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGA 6228 >seq504 Length=87311 Score = 91.5 bits (100), Expect = 2e-13 Identities = 289/432 (67%), Gaps = 47/432 (11%) Strand=Plus/Minus Query 176232 AACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTA---TAC 176288 || || || |||||| |||||| || ||||| ||||| ||| || | || || Sbjct 51320 AATGCAATCGCATTCTCTGGTCCAATTGCTGT-TTTGTTTCTGTCTTCCGAGTAATTTAT 51262 Query 176289 CCAC--TAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTA 176346 |||| ||||||||||| ||||||||| || ||| | | || ||| Sbjct 51261 CCACGTTAGGTCAATCTGGT--GTTCTTTGCGCCTATTTTT--------ACCTATATTTC 51212 Query 176347 GATTCCTATTGTTTCTTC--AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGAT 176404 ||||| | | ||| ||| ||| || || || |||||| ||||||| || |||||||| Sbjct 51211 GATTCATCCTTTTTTTTCCAAGGCGTTTCATAATTGGACATTGAACCCATTTCATATGAT 51152 Query 176405 GGG-AGTTGCTGGTATACT--AGGTGGAGCACTACTAT-CTGCAATCCATGGCGTTACT- 176459 ||| ||| || ||| |||| || | || || |||| | || || ||||| | |||| Sbjct 51151 GGGAAGTCGCCGGTGTACTGGCGGCGCGGCTCTGCTATGCGGCTATTCATGGTGCTACTG 51092 Query 176460 GTTGAAAATACCCTATATGAAGATGGAG-----------AACAGAACAACACCTTCACTG 176508 || |||||||| ||| ||||||||| | |||| ||| | | ||| Sbjct 51091 GTAGAAAATACTTTATTTGAAGATGGTGGGGGATTTTGTGGCAGAGATACA-TTCCGCTG 51033 Query 176509 CGTTCGATTCCACGCAGGAGGAAGAGACCTA-TTCGATGGT-TACTGC--GAACCGCTTC 176564 | || | | || || | ||||| || || ||| ||||| || || | |||||| Sbjct 51032 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTTCAATGGTCAACCGCTACACCCGCTTT 50973 Query 176565 TGGTCGCAAATC--TTCGGGGTTGCGTTTAGTAA--TAAGCGTTGGCTTCAC--TTCT-- 176616 ||||| |||||| || |||||||| || || ||| |||||||||||| |||| Sbjct 50972 TGGTCACAAATCTTTTGGGGGTTGCTTTATCCAATTTAAACGTTGGCTTCACATTTCTTG 50913 Query 176617 TTATGTTGTTTG 176628 | ||||| |||| Sbjct 50912 TCATGTTATTTG 50901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729858340622800