Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1269 111 2e-19 seq317 100 3e-16 >seq1269 Length=73620 Score = 111 bits (122), Expect = 2e-19 Identities = 251/353 (71%), Gaps = 36/353 (10%) Strand=Plus/Minus Query 159051 CAAGAAGAAGA-AACATATAATATC-GTC--GCAGCCCATGGTTACTTC-GGTCGTTTGA 159105 ||||||||||| ||| || || || || || || |||||||| || || || |||| Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 159106 --TCTTCCAATACGCT----TCATTCAACAACTCC-CGTTCCTTGCACTTCTTCCTT--G 159156 |||||||||| ||| |||| |||||||||| ||||| || || |||||| | | Sbjct 6504 CATCTTCCAATATGCTAGTTTCAT-CAACAACTCCTCGTTCTTTACATTTCTTCTCTAGG 6446 Query 159157 CTGCATGGCCTGTT-GTCGGC-ATCTG-GTTCACCGCCCTT-GGCGTGTCAACC-ATGGC 159211 | || ||||| | | || || || || ||| || | || || | | | | ||||| Sbjct 6445 CGGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGC 6386 Query 159212 ATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCC-------TTGATGGTCAGGGTC 159264 |||||||| || |||||||| ||||||| | | | ||||| | || || | Sbjct 6385 TTTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAG-CAAGGAC 6327 Query 159265 GTGTG--TTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCT-GGGTATGGAAGTTA 159321 |||| ||||| || ||||| ||| | | ||||||| || |||||||||||||| Sbjct 6326 GTGTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTA 6267 Query 159322 TG-CATGAGCGTA-ACGCAC--AC-AACTTCCCACTCGACCTTGCTGCTGCTG 159369 || ||||| |||| |||| | || ||||||||||| ||||| ||||||| || Sbjct 6266 TGGCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 >seq317 Length=114279 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 159531 TGTGAAGCGGACCAATACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTAT 159590 ||||||| ||| ||| | | ||||| ||||||||||| || | || || || Sbjct 8583 TGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTAC 8642 Query 159591 TCATGTCGTGCTGGTGCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGAC 159650 ||||| ||||||||| |||| || ||||||||||| ||||| || || ||||| Sbjct 8643 TCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGAT 8702 Query 159651 CAAAGTGACCAATCTTTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGT 159710 || |||||| |||| | || ||||| || | | |||||||| | ||||||||||| Sbjct 8703 CAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCACTTGT 8762 Query 159711 GTCTCCTACCCTACATCAGACGT 159733 | | || ||||| || || || Sbjct 8763 GCGGCTTATCCTACTTCTGATGT 8785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552419664764800