Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq317 116 5e-21 seq1269 113 6e-20 >seq317 Length=114279 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 |||||||| || ||| |||||||||| ||||| ||||| || |||| | |||| Sbjct 8583 TGTGAAGAAGACGTTTACGTCCTCGACGCAGCTGAGGAAGCTGGAATTGACTTGCCTTAC 8642 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 |||||||| |||||| |||| ||| |||||||||||||| ||||| ||||| ||| ||| Sbjct 8643 TCATGCCGTGCTGGTTCTTGCTCAACCTGTGCTGGTAAAGTTGAGTCTGGTACTGTTGAT 8702 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554 || || || ||| | ||||| || || || | ||||| | |||| || ||| Sbjct 8703 CAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGATATGTTCTCACTTGT 8762 Query 177555 GTGTCATATCCCAC 177568 | | | ||||| || Sbjct 8763 GCGGCTTATCCTAC 8776 >seq1269 Length=73620 Score = 113 bits (124), Expect = 6e-20 Identities = 250/351 (71%), Gaps = 32/351 (9%) Strand=Plus/Minus Query 179533 CAAGAAGAAGAGACCT-ATAACATC-GTC--GCAGCACATGGCTACTTC-GGTCGTTTGA 179587 ||||||||||||| || | ||||| || || || ||||| || || || || |||| Sbjct 6564 CAAGAAGAAGAGAACTTACAACATTTGTTAGGCTGCTCATGGTTATTTTTGGCCGATTGA 6505 Query 179588 --TCTTCCAATATGCA---TCCTTTAACAACTCA-CGCTCTTTGCACTTCTTCCTT--GC 179639 ||||||||||||| | | | |||||||| || ||||| || |||||| | || Sbjct 6504 CATCTTCCAATATGCTAGTTTCATCAACAACTCCTCGTTCTTTACATTTCTTCTCTAGGC 6445 Query 179640 TGCGTGGCC-GGTTGTCGGC-ATCTG-GTTCACT-GCTCTTGGCGTGTCAACC-ATGGCG 179694 || ||||| ||| || || || || ||| ||| ||| | || | | | | ||||| Sbjct 6444 GGCTTGGCCCGGTAGTAGGGTATTTGTGTTTACTTGCTTTAGGTTTATGTAGCTATGGCT 6385 Query 179695 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCA-TCCTTGACGGT-----CAAGGACGT 179748 |||||||| || |||||||| ||||||| | | || || | | ||||||||| Sbjct 6384 TTCAACCTAAATGGTTTCAATTTCAACCCCCCAAATCAGTGTAGTTGATAGCAAGGACGT 6325 Query 179749 GTCCTT--AACACATGGGCGGACGTATTGAACCGTGC-AGGTTTGGGTATGGAAGTTATG 179805 || | || || ||||| || | | ||||||| | |||||||||||||||||| Sbjct 6324 GTTAATTGAATACTTGGGCTGATATTATTAACCGTGGTAACCTTGGGTATGGAAGTTATG 6265 Query 179806 -CATGAGCGTA-ACGCAC--AC-AACTTCCCACTCGACCTTGCTGCTGCTG 179851 ||||| |||| |||| | || ||||||||||| ||||| ||||||| || Sbjct 6264 GCATGAACGTACACGCTCCAACGAACTTCCCACTAGACCTAGCTGCTGTTG 6214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610270016572800