Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq422 224 1e-53 seq144 167 3e-36 seq1401 127 3e-24 seq330 114 2e-20 >seq422 Length=101449 Score = 224 bits (248), Expect = 1e-53 Identities = 426/622 (68%), Gaps = 5/622 (1%) Strand=Plus/Plus Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 || || || ||||| |||||||| || || || ||||| || | |||||| || || Sbjct 43759 ATCAAACAAGCGAAATCACAATGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAA 43818 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGA 39729 || ||||||||||||| ||| || || || | ||| || || | | |||||| | || || Sbjct 43819 GTAAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAAAATAGAA-CAAAAGCTACCGGA 43877 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 |||||||| ||||| || ||||| || || | || || || | ||| | Sbjct 43878 GAAGAAGATACCTTCAACGCAAGCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGATCC 43937 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| ||| ||||| | ||||||||| |||||||||| || ||||| || || Sbjct 43938 GTCGATCCATTTCATCGCCCATTGTGCTTTCTTCGTTACACAAGGAATGGTTTCAATTGC 43997 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 ||||||| || | | || | ||||||| | ||| ||||| | | |||||||| Sbjct 43998 GCGGAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATA 44057 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || || || || || |||||||| || |||||||||||||| | || || | Sbjct 44058 CATCTCAGAGTGAATATTCTCAATCGCGATTTGAAATCCGTAAAAGGCACGAGCCTCGGA 44117 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || || || || |||| | | ||| || || || || || || Sbjct 44118 GATCTGAACATCGGACATGAATCGGGTTGATAGATTCTCTAAAACGATGCCGTCTGATGC 44177 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG-GGTGTCA--ATTTATT 40086 ||| || || || | ||| ||||| || || | | ||| ||| || | | | || | Sbjct 44178 GGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGTCGTCGTTTAAGGAATTTTC 44237 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| |||||| |||| ||| |||||||| || ||||| || || || || || Sbjct 44238 CCAGTCGCGATTATCTTGAGATAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGC 44297 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 ||||||||||| | |||||| | | ||||||| ||||| || ||| |||| || ||| Sbjct 44298 TTTTTTGTACATCTCCCATATCTGAGGATATTGGATTGGGAACATACAGAATCGATCTGG 44357 Query 40207 ATTTTTTGCAAGGATGGGTTCC 40228 | || || || || |||||| Sbjct 44358 AGTTGGTGTTAGAATCGGTTCC 44379 >seq144 Length=115930 Score = 167 bits (184), Expect = 3e-36 Identities = 567/879 (65%), Gaps = 6/879 (1%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||||||||| |||||||| ||||||||||| || || ||||| || | | || ||| Sbjct 56389 TTTTTGGTAATCACCAACACGTTTCTCGAAGAAGTTCGTTTTACCCTGAAGCGAGATAAG 56330 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| |||||||||||||||| || || || | || | | | Sbjct 56329 TTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCGTACCCAAGCGCACCCAA 56270 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA- 39503 | |||||| |||||||| || || || |||||| |||| ||||| || | | Sbjct 56269 AAGTCTATCCGCAACAAACTCAATATACTGACTCATCAACTCACGGTTCATCCCAACCAA 56210 Query 39504 -GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | || || || || || | ||||||| | ||||| || ||||| || | Sbjct 56209 CGCGCAA--GGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCGACGGCGTCGCAGACG 56152 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || || | || ||| || || | | || | | | | | ||| ||| Sbjct 56151 ATTGACTTCACGCGCTCCTCCGTCAGCTTCGTCCTCAAGAGCGTGTAGAGGAGGCAAGCG 56092 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || || |||| ||| || |||| | || ||||||||||| || || | |||||| Sbjct 56091 AAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGC 56032 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 || || || || || || ||||| || |||| |||| ||| | || || |||||||| || Sbjct 56031 ATGAGTCCTCGTTTCTTAAGCCAGAAGATGG-AGCAGAAGCTACCGGAGAAGAAGATACC 55973 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTT 39801 ||| || || || || || | || || || | || | | ||||| | Sbjct 55972 TTCAACGCAAGCGAAAGCTACGATTCGTTCAGCGAAGGTTTGAGATCCGTCGATCCAAGT 55913 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| | ||||||||| || ||||| || ||||| || || ||||||| Sbjct 55912 CATCGCCCACTGTGCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGATG 55853 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || | | || | ||||||| | || ||||| | | ||||||||||| || ||||| Sbjct 55852 ATCTCTCTCTTTGTTATCTTTGATGTACGTATCGAGAAGGAGACTATACATCTCGGAATG 55793 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 || || |||||||| ||||| |||||||| ||| | || || | | ||| || || Sbjct 55792 AATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC 55733 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 ||| |||| | || | ||| || || || || || ||||| || || || Sbjct 55732 TGACATGAATCGTGAAGCGAGATTCTCTAAAACGATACCGTCTGATGCGGCGAAGAAAGC 55673 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 | || ||||| || || | |||| || | | || | ||| || || Sbjct 55672 GAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCGCGTCCGTC 55613 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || ||||| ||| |||||||| || ||||| ||||| || || || || || ||||| | Sbjct 55612 TTGTGATAGATCGACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTATACATCTC 55553 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 ||| || | | || || || ||||| ||| ||||| Sbjct 55552 CCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 55514 >seq1401 Length=32814 Score = 127 bits (140), Expect = 3e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||||||||||| |||||||||||| | | ||| | || || Sbjct 17025 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 16966 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| ||||| ||||| ||||| || ||||| || | || || | ||||| Sbjct 16965 GTAAGTTTTGATAGCAGATTCAATATCATCCTTGTGAATGCCAACAGCAACCCTCATCAG 16906 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || | | | | |||||| ||||||||| |||| || Sbjct 16905 CATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAAAGGTATGATCTTTCAAG 16846 Query 70170 AGTTTTAAACCCAAA 70184 ||||||||||||||| Sbjct 16845 AGTTTTAAACCCAAA 16831 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | |||| ||||| | ||| | || | |||||| || | |||||| Sbjct 17342 TCCTCCTTGGTCAACATATCGAGCAGTATCGTTAAATACACGCAGCATTGGGACAATACC 17283 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| |||||||| |||| ||||||||| || || Sbjct 17282 ATTAGAAGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 17223 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 17222 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 17163 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||||||| ||||| Sbjct 17162 GCCCTCAATGCTATCATCTTTCATG 17138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 || |||||||||||||| | || || || |||||||| |||||||| || | | | ||| Sbjct 18659 AGGATAAATGCATCTGCTAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 18600 Query 69142 GAACTTTCAGCT-TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| ||| ||| | |||||| ||||| | ||||||||| ||||| ||||| Sbjct 18599 GAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 18544 >seq330 Length=201778 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | |||| | ||| | |||| |||||| |||| ||| || Sbjct 18742 TCCTCCTTGGTCAACATAACGAACAGTATCATTGAATACTCGCAGCATTGGAACAATTCC 18683 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| ||||| || ||| ||| |||||||| ||| ||||| || | || Sbjct 18682 ATTAGATGATCCATTAGTGCCACGAATGTAACTTCCAGCTGCACGAATGTTGTGGACTGA 18623 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || | | || | ||||||| |||||||||||||||||| Sbjct 18622 AACACCAATACCCCCGGCTGATCTGCTTATAACAGCACAATCTTTCAATGTGTCATATAT 18563 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||| ||||||||||| ||||| | ||||| |||||| Sbjct 18562 ACCCTCGATGCTATCATCCTTCATGCATATCAGAAAGCAGCTA 18520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||| || | ||||||| ||| |||||||||||| || ||| | | || Sbjct 18415 AGTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCGTTGAGACATTAAATG 18356 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| ||||| || || ||||| || || || || | | || | ||||| Sbjct 18355 GTAAGTTTTGATAGCAGAATCAATATCTTCCTTGTGGATGCCAACAGAAACCCTCATCAG 18296 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || ||| | | ||| || ||||||||| | || || Sbjct 18295 CATGTGTTGAGGCCTTTCAACAACTTTGCCTTGGACTTTTAAGAGGTATGATCTCTCTAG 18236 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 |||||||| ||||| || | |||| ||| || Sbjct 18235 CGTTTTAAAACCAAAGTAATCGTATTCAAAATC 18203 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||||||| | ||||| || |||||| ||||| | | ||||||| || || ||| Sbjct 20537 AAGACTCTACGACTATAAATGTTTGAGGTATAGGGTTCAAAACATTCATTGTTCCCAAGA 20478 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGT 68853 || || ||||| ||||||||||| |||||||| | | | |||||| | || | Sbjct 20477 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAATTTCTGATTCCGTTC 20418 Query 68854 GTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAA 68913 || || | || | ||| |||| ||||| | ||||| || | |||||||| Sbjct 20417 TTTGAAATCATTTCCCTCAGAGCAGTCCAGTCCCATCGGTCAGAAGGGATTACATTCCAC 20358 Query 68914 AGATCGTATTGTAGAATTCC 68933 | ||| ||| |||||||| Sbjct 20357 ATATCAGGTTGAAGAATTCC 20338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686841740528400