Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq144 123 2e-23 >seq144 Length=115930 Score = 123 bits (136), Expect = 2e-23 Identities = 252/369 (68%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||| |||||| | | || || || ||| || || || || || || || || ||||| Sbjct 55732 AGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATAT 55791 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 |||||| || ||||| ||||| || | |||||||||||||||||| | |||| | Sbjct 55792 TCATTCCGAGATGTATAGTCTCCTTCTCGATACGTACATCAAAGATAACAAAGAGAGAGA 55851 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCC 44093 || | || ||||| ||||| | ||| ||| | | |||||| | ||||| Sbjct 55852 TCATCTCTTCCGCGCGATTGAAACCATTCCTTGCGTCGCGA-AGAAAGCACAGTGGGCGA 55910 Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | | ||||| | | | | | || | |||||| | || || || || || | Sbjct 55911 TGACTTGGATCGACGGATCTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGTTG 55970 Query 44154 AAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 |||| || ||||| || || | | | ||| |||| || ||| | ||||||||||| | Sbjct 55971 AAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CCATCTTCTGGCTTAAGAAACGAGGACTC 56029 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 |||||||| || || || || || || || || ||| || ||||||||||| |||||| Sbjct 56030 ATGCCTGGTTTAACCTTCTCTAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGAT 56089 Query 44273 TTTGCTTGC 44281 || |||||| Sbjct 56090 TTCGCTTGC 56098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418168399050