Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq275 129 5e-25 seq308 104 2e-17 seq2666 102 7e-17 seq863 98.7 8e-16 seq3586 87.8 2e-12 >seq275 Length=143682 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| |||||||| | || || || |||||||| ||||| ||| | Sbjct 123672 CCTCCACGAAGACGCAACACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGCC 123613 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | ||||||||||| || ||||| || Sbjct 123612 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 123553 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||||| ||| | | | || | |||||| | | || ||| Sbjct 123552 ATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCGACT 123493 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | || || || ||||| ||||| || ||||||||| || Sbjct 123492 TCAAGGGTGATTGTCTTCCCGGTGAGAGTCTTCACGAATATTTGCATACCT 123442 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || ||||| || |||||||| || |||| ||| | || || Sbjct 123883 ACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAATGT-GCGACCATCCTC 123825 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||| || ||| | ||||||||||| || ||||| || | ||| || || || Sbjct 123824 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 123765 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | | || | ||||| | | ||||| || || || || | || Sbjct 123764 GATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTT 123705 Query 27218 GCCCGTC-AGAGTTTTCACAAAGATTTGCATAGCT 27251 || ||| ||||| ||||| ||||| |||||| || Sbjct 123704 TCCGGTCAAGAGTCTTCACGAAGATCTGCATACCT 123670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| ||||| || | || || || || ||||||||||| ||| | Sbjct 123444 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 123385 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || || ||||| || |||||| | || | | ||| || ||||| || Sbjct 123384 AAGGTACGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 123325 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || ||||||| ||||| | | || | ||||| | | || || Sbjct 123324 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 123265 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||| || || || ||||| |||||| Sbjct 123264 TCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 123217 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||| |||||||| ||| | || || |||| ||||| || || || Sbjct 139296 GTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTACGGC-CGTCCTCGAGTTGCTTTCC 139238 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || | | || || ||||| || | |||||| ||||| |||||| || Sbjct 139237 GGCGAAGATCAATCTTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTT 139178 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || || ||||| |||| || || || || || Sbjct 139177 GACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGAGTGATAGTCTTTCCGGTTAGGGT 139118 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| || |||||||||||| Sbjct 139117 TTTGACGAAGATTTGCATA 139099 >seq308 Length=205501 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | |||||||| | || || ||||| || || ||||| ||| Sbjct 131165 CCTCCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTCTGGATGTTGTAATCGGCA 131224 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||||||||| || | ||||| | |||||| ||||| || Sbjct 131225 AGAGTGCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 131284 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| ||| | | || || ||||| | | |||||| Sbjct 131285 ATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAACGGTGTCAGAGCTCTCAACT 131344 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || | |||||| || || ||||||||||| |||||||| Sbjct 131345 TCTAGGGTAATGGTTTTGCCAGTGAGGGTTTTCACAAATATTTGCAT 131391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| ||||| || | ||||| | ||| || ||||| || | || |||||| Sbjct 131465 TCCTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTA 131524 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | | || | |||||| | | |||||| || ||||| || Sbjct 131525 TCTTGGATCTTTGCCTTGACGTTATCAATAGTGTCAGAGCTTTCAACCTCAAGAGTAATG 131584 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || ||||| || ||||||||||||||| Sbjct 131585 GTCTTCCCTGTAAGAGTCTTAACAAAGATTTGCATA 131620 >seq2666 Length=20083 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| || | ||| | || || |||| || |||||||| || | Sbjct 9508 TGCCACCTCGAAGACGCAACACAAGATGAAGTGTTGACCCTTTCTGTATATTGTAATC-C 9566 Query 27079 TCATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | || | || || || || || || ||| | || || | ||||| ||||| Sbjct 9567 GCAAGAGTACGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTTTGTTGGTCCGGA 9626 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || || || ||||||| |||||| | || | | | || |||||||| | | |||| Sbjct 9627 GGGACTCCTGCTTTATCTTGGATCTTTATCTTGATGTTATCAACAGTGTCGGAGCTTTCA 9686 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| |||| ||| | ||||| || ||||| ||||| ||||||||||| Sbjct 9687 ACTTCAAGAGCTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCAT 9736 >seq863 Length=117140 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | ||| || || || || || ||||||||| | | || |||||||| Sbjct 77653 ACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCTTCG 77712 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| |||| | ||||| || ||||| || | ||||| || || | Sbjct 77713 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGG 77772 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | ||||| | || || || || || || || | || Sbjct 77773 ATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTA 77832 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| ||||| Sbjct 77833 CCCGTTAGGGTTTTCACGAAGATCTGCAT 77861 >seq3586 Length=17470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | || | || || || || || || |||||||| || |||| | Sbjct 6207 CGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGACCA 6148 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || |||||||| || ||| | || || | ||| || ||||| || | ||||||||| Sbjct 6147 TCCTCAAGCTGTTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTA 6088 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| || | | || | ||||||| | ||||| || || || || Sbjct 6087 TCTTGGATCTTAGCCTTGACATTGTCGATTGTGTCTGAGCTCTCAACCTCGAGGGTAATG 6028 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || |||||||| |||||||| |||||| Sbjct 6027 GTTTTCCCTGTTAGAGTTTTGACAAAGATCTGCATA 5992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||| || || | || | || ||| Sbjct 6429 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 6370 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || ||| | ||||| | |||||| ||||| || | || || || || Sbjct 6369 AGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 6310 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||||| | ||||| || | || |||| ||| Sbjct 6309 ATCTTAGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 6250 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| ||| |||||||||||||||||| Sbjct 6249 CCTGTCAAAGTCTTCACAAAGATTTGCATA 6220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424893952884720