Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3342 145 1e-29 seq236 145 1e-29 seq278 141 1e-28 seq4792 107 2e-18 seq422 107 2e-18 seq144 91.5 2e-13 >seq3342 Length=29012 Score = 145 bits (160), Expect = 1e-29 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| || || || | || | ||| ||||| || || | | || || || Sbjct 13829 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 13888 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 13889 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 13948 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | ||| |||||||| |||||||| || |||| |||| | | |||| | || Sbjct 13949 AGTGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 14005 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 14006 ACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCCTTTTTGAAA 14065 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| |||||| ||||| ||||||||||| ||||| | | ||||| Sbjct 14066 AGATCTCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAGAG 14125 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || |||||| || | |||||| || | Sbjct 14126 --ATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAAGAGGGTTTTCC 14183 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| | || || | ||| ||||||| ||||||| || | Sbjct 14184 CAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACCGCAGTAA 14243 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| || || Sbjct 14244 ACCTCTCAGGCTTCTTCAGAAACTCAAC 14271 >seq236 Length=170583 Score = 145 bits (160), Expect = 1e-29 Identities = 203/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || |||||||||||||||||| || Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 103673 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| |||||||||||||||||||| ||||| Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613 Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || | ||||| | ||| | ||| || ||||| |||| Sbjct 103612 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCTCTAACTCTAGATGCACCAACAC 103555 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||| | ||| ||||| | || || | ||| || |||||| || || ||| | Sbjct 103554 CCACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTCTC 103495 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 | || | |||| || | ||||||||| |||||||| ||| Sbjct 103494 CAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGGC 103454 >seq278 Length=108333 Score = 141 bits (156), Expect = 1e-28 Identities = 280/413 (68%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | || ||||| |||| || | || ||||| | | ||||| Sbjct 39038 TCAAGAATGTCTGCTCTGTTGGTGGCAGCAACTACGATAACACCAGTGTTACCTTCAAAA 38979 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||||| || |||||||| |||||||| || | Sbjct 38978 CCATCCATCTCAGTTAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCTCC---A 38922 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 38921 CCAATCCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCAA 38862 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| | | || |||||||| || || |||||| ||||||||| Sbjct 38861 GGAGCATTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTCGAGGCACCAACACCAACA 38802 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | ||||| || ||| || ||| | |||||| ||| Sbjct 38801 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGAACACCAGCTTCACCAGCG 38742 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 |||||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 38741 ATGGCTTTTGCCAAAAGGGTTTTCCCTGTACCAGGAGGACCAATAAGGAGAACACCTTTC 38682 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||||||||||| || |||||||||| | ||| ||||| || || Sbjct 38681 GGGATCTTGGCACCAACAGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCAAC 38629 >seq4792 Length=4203 Score = 107 bits (118), Expect = 2e-18 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| |||||||| ||||||||||| | Sbjct 1331 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACC--A 1388 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | |||| | ||||| ||||||||||||||||| || |||||| Sbjct 1389 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 1448 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | ||||| | ||| | ||| || ||||| ||||| Sbjct 1449 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 1507 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||| ||||| | | |||| ||| | ||| || || | ||| || Sbjct 1508 AACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAGAACGGTACTCCCGCTTCTCC 1567 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||| |||| || | || || || || ||||| || Sbjct 1568 AGCGACAGCTCTAGCCAAAAGCGTTTTCCCTGTACCCGG 1606 >seq422 Length=101449 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||| || |||| || || ||||| || ||||| || || ||||| | ||| Sbjct 43780 TGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCT 43839 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||||||||| |||||| || || ||||||||||||||||| || || || Sbjct 43840 CGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAA 43899 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| || | | ||||| |||||| |||| | | || | ||||||||| ||| Sbjct 43900 GCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA---TCCGTCGATCCATTTCATCGCC 43956 Query 122851 CATTTCGCCTTCTTC 122865 |||| || |||||| Sbjct 43957 CATTGTGCTTTCTTC 43971 >seq144 Length=115930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | ||| || |||||| || ||| |||||||| || || ||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| ||||||||||||||||| || || || || || Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | ||||| ||||||| |||| | | || | ||| |||| ||||| | Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCCCACTGT 55900 Query 122857 GCCTTCTTC 122865 || |||||| Sbjct 55899 GCTTTCTTC 55891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627970688376000