Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23]
7,810 sequences; 167,352,128 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq3342 145 1e-29
seq236 145 1e-29
seq278 141 1e-28
seq4792 107 2e-18
seq422 107 2e-18
seq144 91.5 2e-13
>seq3342
Length=29012
Score = 145 bits (160), Expect = 1e-29
Identities = 303/448 (68%), Gaps = 10/448 (2%)
Strand=Plus/Plus
Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509
|| ||||| || || || | || | ||| ||||| || || | | || || ||
Sbjct 13829 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 13888
Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569
|||| || | || ||||| | | ||||| ||||||||||| || || | ||||||
Sbjct 13889 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 13948
Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626
| ||| |||||||| |||||||| || |||| |||| | | |||| | ||
Sbjct 13949 AGTGTCTGTTCTCTTTCATCATTACCTCC---ACCAATTCCAGTTCCTCTTTGCCTACCA 14005
Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686
|| ||||| || ||||| | || ||||| || || |||||| ||| ||| ||
Sbjct 14006 ACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCCTTTTTGAAA 14065
Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746
||||| || |||||| |||||| ||||| ||||||||||| ||||| | | |||||
Sbjct 14066 AGATCTCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAGAG 14125
Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804
||| | ||| || ||| | |||||| || |||||| || | |||||| || |
Sbjct 14126 --ATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAAGAGGGTTTTCC 14183
Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864
| ||||| || ||| | || || | ||| ||||||| ||||||| || |
Sbjct 14184 CAGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACCGCAGTAA 14243
Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
| ||||| || | ||| ||||| || ||
Sbjct 14244 ACCTCTCAGGCTTCTTCAGAAACTCAAC 14271
>seq236
Length=170583
Score = 145 bits (160), Expect = 1e-29
Identities = 203/281 (72%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | || |||||||| || |||||||||||||||||| ||
Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 103673
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | ||| ||||| | | ||| | ||||| |||||||||||||||||||| |||||
Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613
Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714
|| || |||||| || | ||||| | ||| | ||| || ||||| ||||
Sbjct 103612 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCTCTAACTCTAGATGCACCAACAC 103555
Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774
| ||||| | ||| ||||| | || || | ||| || |||||| || || ||| |
Sbjct 103554 CCACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTCTC 103495
Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815
| || | |||| || | ||||||||| |||||||| |||
Sbjct 103494 CAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGGC 103454
>seq278
Length=108333
Score = 141 bits (156), Expect = 1e-28
Identities = 280/413 (68%), Gaps = 6/413 (1%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| || || | | || ||||| |||| || | || ||||| | | |||||
Sbjct 39038 TCAAGAATGTCTGCTCTGTTGGTGGCAGCAACTACGATAACACCAGTGTTACCTTCAAAA 38979
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
||||||||||| || || | ||||||| || |||||||| |||||||| || |
Sbjct 38978 CCATCCATCTCAGTTAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCTCC---A 38922
Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
||| || | | | |||| | || || ||||| || ||||| | |||||||| ||
Sbjct 38921 CCAATCCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCAA 38862
Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719
|| ||| || ||| | | || |||||||| || || |||||| |||||||||
Sbjct 38861 GGAGCATTCTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTCGAGGCACCAACACCAACA 38802
Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779
|||||||| ||||| | | ||||| || ||| || ||| | |||||| |||
Sbjct 38801 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGAACACCAGCTTCACCAGCG 38742
Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839
|||||| || | ||||| || || ||||| || ||| || || | |||
Sbjct 38741 ATGGCTTTTGCCAAAAGGGTTTTCCCTGTACCAGGAGGACCAATAAGGAGAACACCTTTC 38682
Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
||||||||||||||| || |||||||||| | ||| ||||| || ||
Sbjct 38681 GGGATCTTGGCACCAACAGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCAAC 38629
>seq4792
Length=4203
Score = 107 bits (118), Expect = 2e-18
Identities = 194/279 (70%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | | |||||||| |||||||| ||||||||||| |
Sbjct 1331 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACC--A 1388
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | ||| ||||| | | |||| | ||||| ||||||||||||||||| || ||||||
Sbjct 1389 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 1448
Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715
|| || | ||| | || | ||||| | ||| | ||| || ||||| |||||
Sbjct 1449 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 1507
Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775
|||||| | ||| ||||| | | |||| ||| | ||| || || | ||| ||
Sbjct 1508 AACAAAAAGCTCAACAAACTCAGAAGCAGCACACGAAAAGAACGGTACTCCCGCTTCTCC 1567
Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|||| |||| || | || || || || ||||| ||
Sbjct 1568 AGCGACAGCTCTAGCCAAAAGCGTTTTCCCTGTACCCGG 1606
>seq422
Length=101449
Score = 107 bits (118), Expect = 2e-18
Identities = 141/195 (72%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730
|| ||||| || |||| || || ||||| || ||||| || || ||||| | |||
Sbjct 43780 TGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCT 43839
Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790
|| ||||||||||| |||||| || || ||||||||||||||||| || || ||
Sbjct 43840 CGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAA 43899
Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850
||||| || | | ||||| |||||| |||| | | || | ||||||||| |||
Sbjct 43900 GCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA---TCCGTCGATCCATTTCATCGCC 43956
Query 122851 CATTTCGCCTTCTTC 122865
|||| || ||||||
Sbjct 43957 CATTGTGCTTTCTTC 43971
>seq144
Length=115930
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
|| || ||||| || || | ||| || |||||| || ||| |||||||| || || |||
Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|| | ||| | || | |||||| ||||||||||||||||| || || || || ||
Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957
Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856
|| | | ||||| ||||||| |||| | | || | ||| |||| ||||| |
Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCCCACTGT 55900
Query 122857 GCCTTCTTC 122865
|| ||||||
Sbjct 55899 GCTTTCTTC 55891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627970688376000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |