Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq144 100 4e-16 seq422 98.7 1e-15 seq4792 84.2 3e-11 seq236 82.4 9e-11 >seq144 Length=115930 Score = 100 bits (110), Expect = 4e-16 Identities = 182/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | ||| || |||||| | ||| |||||||| || || ||| Sbjct 56076 CCTTCGTCTCGAGAGATCAATTCGTTAGAGAAGGTTAAACCAGGCATGAGTCCTCGTTTC 56017 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||||| || || || || ||||| Sbjct 56016 TTAAGCCAGAAGATGGAGCAGAAGCTACCGGAGAAGAAGATACCTTCAACGCAAGCGAAA 55957 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || ||||| |||| | || | || | ||| ||||||||||||| Sbjct 55956 GCTACGATTCGTTCAGCGAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCCCACTGT 55900 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || || ||| ||| || || | ||| | ||||| ||||| | | ||| | | || Sbjct 55899 GCTTTCTTCGCGACGCAAGGAATGGTTTCAATCGCGCGGAAGAGATGATCTCTCTCTTTG 55840 Query 130272 ATGGATCTTTGATGTACTTATC 130293 | ||||||||||||| |||| Sbjct 55839 TT--ATCTTTGATGTACGTATC 55820 >seq422 Length=101449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||| ||||| | ||||| ||||| || ||||| || || ||||| | ||| Sbjct 43780 TGAAGACCTTCGTCTCTTGAGATCAGTTCGTTGGAGAAAGTAAGTCCAGGCATTAAACCT 43839 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||||||||||||||| | |||||| || ||||||||||| || || || || Sbjct 43840 CGTTTCTTCAACCAGAAAATAGAACAAAAGCTACCGGAGAAGAAGATACCTTCAACGCAA 43899 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || | || || ||||| ||| | || | || | ||| ||||||||| Sbjct 43900 GCAAAAGCCACGATTCGTTCAGCGAAGCTTTGAGA---TCCGTCGATCCATTTCATCGCC 43956 Query 130208 CACTGCGCCTTTTTC 130222 || || || || ||| Sbjct 43957 CATTGTGCTTTCTTC 43971 >seq4792 Length=4203 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || ||||| || |||||||| | |||||||| || Sbjct 1331 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACCA-- 1388 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | |||| | || || || ||||| ||||| || || || ||| Sbjct 1389 CCTCCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATA 1448 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || ||||| | ||| | ||||| ||||| ||||| Sbjct 1449 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACACC 1507 Query 14329 CACAAACATCTCCACAAA 14346 ||||| | ||| ||||| Sbjct 1508 AACAAAAAGCTCAACAAA 1525 >seq236 Length=170583 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| | ||||| ||||| ||||| | |||||||| | Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 103673 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || || ||||| ||||| ||||| || || Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || || || | || ||||| | ||||| ||||| ||||| |||||| Sbjct 103612 CAAGGAGCTTTCGCCTTAGCCTTCTCAAACAAATCTCTAACTCTAGATGCACCAACACCC 103553 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | ||| ||||| | | || | || || ||| || || | ||| || Sbjct 103552 ACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTCTCCA 103493 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| || | ||||||||| ||||| || || Sbjct 103492 GCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 103455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618374825263600