Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq144 127 2e-24 seq278 113 5e-20 seq236 111 2e-19 seq4792 107 2e-18 seq3342 107 2e-18 seq422 105 8e-18 seq330 91.5 2e-13 >seq144 Length=115930 Score = 127 bits (140), Expect = 2e-24 Identities = 376/572 (66%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 94370 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 94429 ||||||| | |||| || | | || ||||| ||||||| | |||||||| || | Sbjct 55512 ACAGATTCTGTATGTTTCCGATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGC-C 55570 Query 94430 AAATGAGTAAT-TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACG--ATTGGA 94486 || | | ||||| || ||||| || ||||| ||| | || ||||| ||||| Sbjct 55571 GAAGCATCGTTCTGGACCGCCGAAGAAGTCGATCTATCACAAGAC--GGACGCGATTGGG 55628 Query 94487 AGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGAT 94546 ||| |||||| || |||| | ||||| ||| || |||| || ||||| || | || Sbjct 55629 AGAATCTAAACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCAT 55688 Query 94547 CCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGAT-GAGGTGCAATCCTCT 94605 | || || || ||||| |||||| || | || || || || || ||| ||| Sbjct 55689 CAGACGGTATCGTTTTAGAGAATCTCGCTT-CACGATTCATGTCAGATGTTCAAGTCTCG 55747 Query 94606 GAAGCGAGATCCTTCTATGCGTATCAGTGTCATAATGAAATGGTGCATGGGGAGACATAC 94665 || ||| | | ||||| | | ||| | ||| | | ||| |||| || Sbjct 55748 GAGGCGCGTGCTTTCTACGGATTCCAGATCGCGATTGAGAATATTCATTCCGAGATGTAT 55807 Query 94666 AGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCC 94725 ||| || | || | ||| || || ||| |||| | || ||||| || Sbjct 55808 AGTCTCCTTCTCGATACGTACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCG 55867 Query 94726 ATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA 94785 || |||| |||| || | |||||||| | ||||| |||| ||| | || | Sbjct 55868 ATTGAAACCATTCCTTGCGTCGCGAAGAAAGCACAGTGGGCGATGACTTGGATCGACGGA 55927 Query 94786 AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 94845 || | |||| ||||| ||| || | || || || || ||||| |||||||||||| Sbjct 55928 ---TCTCAAACCTTCGCTGAACGAATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTC 55984 Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || ||| ||||||| | || | ||||| ||||| ||||| |||||||| ||| | | Sbjct 55985 TCCGGTAGCTTCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGTTTAACC 56044 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| | |||||||| ||||| || Sbjct 56045 TTCTCTAACGAATTGATCTCTCGAGACGAAGG 56076 >seq278 Length=108333 Score = 113 bits (124), Expect = 5e-20 Identities = 249/367 (68%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || | || || |||| || ||||| | ||||||||| || Sbjct 38984 TCAAAACCATCCATCTCAGTTAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 38925 Query 9671 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 |||| || | | | |||| | || || ||||| || ||||| | ||||| Sbjct 38924 ---CCACCAATCCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACA 38868 Query 9728 ATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 ||||| || ||| || || ||| ||| ||||| || || | | ||| || || Sbjct 38867 ATGCAAGGAGCATTCTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTCGAGGCACCAAC 38809 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845 ||||||||||||||| ||||| | | | | | || | || ||| || ||| || || Sbjct 38808 ACCAACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGAACACCAGCTT 38750 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 |||| || |||||| || | ||| || || || ||||| || ||| ||||| Sbjct 38749 CACCAGCGATGGCTTTTGCCAAAAGGGTTTTCCCTGTACCAGGAGGACCAATAAGGAGAA 38690 Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||||| || |||||||| ||| || | ||||||| || | ||| ||||| || | Sbjct 38689 CACCTTTCGGGATCTTGGCACCAACAGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCAA 38630 Query 9966 CAATTTC 9972 | | ||| Sbjct 38629 CCACTTC 38623 >seq236 Length=170583 Score = 111 bits (122), Expect = 2e-19 Identities = 272/405 (67%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || ||||| || ||||| | |||||||| || Sbjct 103730 AAATCCATCCATCTCAGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCCT-- 103673 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | ||||| |||||||||||||||||||| || ||| Sbjct 103672 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAATACAATG 103613 Query 9731 CATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || |||||| ||| ||||| | ||| | || || || | || || || Sbjct 103612 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAAATCTC-TA-ACTCTAGATGCACCAAC 103557 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||| ||||| | ||| ||||| | || || | || || ||| || || | ||| Sbjct 103556 ACCCACAAAAAGCTCAACAAACTCTGAAGCCGCGCAGGAGAAGAATGGTACTCCTGCTTC 103497 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | |||| || | || |||||||||||||| ||| || | || | Sbjct 103496 TCCAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGGCGGTCCAACAAGCAAACA 103437 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| ||||||||||| || || ||| | ||||| | ||| | ||||||||| Sbjct 103436 CCCTTTAGGAATCTTGGCACCCAAGGCAGTGTACTTATCAGGGTTCTTCAAAAAATCCAC 103377 Query 9967 AATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || ||| | || ||| ||||| ||| ||| ||||||| Sbjct 103376 AACTTCCTGTAACTCAAGCTTGGCTTGATCAGCCCCAGCAACATC 103332 >seq4792 Length=4203 Score = 107 bits (118), Expect = 2e-18 Identities = 183/258 (71%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| | |||| | ||| ||||| || | |||| | ||| | | | | ||| Sbjct 1274 ATCAAGAACATCAGGTCTATTAGTCGCAGCCAACACAATGACACCAGAATTACCAGAAAA 1333 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||||| |||||||| || ||||| |||||||||| |||||||| | | | Sbjct 1334 TCCATCCATCTCAGTCAAAAGCTGATTAATCGTTTGTTCCCTCTCATCATTACC--ACCT 1391 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| ||||| | | |||| | ||||| ||||||||||||||||| || || || || Sbjct 1392 CCCATTCCAGCTCCTCTTTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATACAA 1451 Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || ||||| || || ||||| | ||||| || || || | || || ||||| Sbjct 1452 GG--AGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAACACC 1507 Query 9790 AACAAACATCTCCACAAA 9807 |||||| | ||| ||||| Sbjct 1508 AACAAAAAGCTCAACAAA 1525 >seq3342 Length=29012 Score = 107 bits (118), Expect = 2e-18 Identities = 311/473 (66%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 13829 CGGTCAAACCGCCCTGGTCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 13888 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 13889 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 13948 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 13949 AGTGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 14005 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | || || ||||| || |||||| || || || Sbjct 14006 ACAGCATCTATTTCATCTACAAAAACAATGCACGGAGCATTTTCTTTGGCCTTTTTGAAA 14065 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 14066 AGATCTCGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAG-A 14124 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | |||||| ||| | |||||| ||||||||| || | || || || || Sbjct 14125 GATGGAAAAGAAGGGTACACCGGCTTCACCAGCAATGGCTTTTGCCAAGAGGGTTTTCCC 14184 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 ||||| || ||| | ||||| ||||| || ||| ||| ||| || ||| Sbjct 14185 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCA--ACCGCAGTA 14242 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990 | |||||||| | ||| ||||| || || | ||| || || | |||||| Sbjct 14243 AACCTCTCAGGCTTCTTCAGAAACTCAACCACTTCCATGAAATCTTGTTTGGC 14295 >seq422 Length=101449 Score = 105 bits (116), Expect = 8e-18 Identities = 140/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| | ||||| ||||| ||| | || | || | ||| ||||| ||| Sbjct 43970 AAGAAAGCACAATGGGCGATGAAATGGATCGACGGA---TCTCAAAGCTTCGCTGAACGA 43914 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || ||||| || ||||| |||||||||||||| ||| ||| || |||||| Sbjct 43913 ATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTTTGTTCTATTTTC 43854 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||| | ||||| |||||| | ||||| || || ||||||||||| || ||||| | Sbjct 43853 TGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAACGAACTGATCTCAAGA 43794 Query 94930 GACGAGGGACTCCA 94943 ||||| || || || Sbjct 43793 GACGAAGGTCTTCA 43780 >seq330 Length=201778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 105767 ACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 105826 || || ||||| || ||| || | || |||||||||||| |||||||| |||| Sbjct 20861 ACTGTGTGGGAGATTAAGCAGAGAAAAGTGGTTGACATGGCCGTTGATCGTGGATGCTTT 20920 Query 105827 ATTGATCAAAGTCAAAGTATGAATCTCTTCATGGA-AAGTCCAACGATGTCCAAGCTCTC 105885 || |||||||| |||||| ||||| | |||||| || ||||| || | |||||| | Sbjct 20921 ATAGATCAAAGCCAAAGTTTGAATATACACATGGACAAACCCAACTTTG-CAAAGCTCAC 20979 Query 105886 TTCTATGCACATGTACAGTTGGAAGAAGG 105914 |||| ||||| | ||| |||||| |||| Sbjct 20980 TTCTTTGCACTTCTACGCTTGGAAAAAGG 21008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583203859164400