Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq422 111 2e-19 seq144 96.9 4e-15 >seq422 Length=101449 Score = 111 bits (122), Expect = 2e-19 Identities = 301/451 (67%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||||||| | || |||||||| || || ||||||||||| || || || || | Sbjct 44221 ACGACGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCATCAGACGGCATCG 44162 Query 59737 TGATGGAAAATATAG--ACATGAA-CTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGT 59793 | | || ||| || || || | | ||| ||||| ||||| ||||||| || Sbjct 44161 TTTTAGAGAATCTATCAACCCGATTCATGTCC---GATGTTCAGATCTCCGAGGCTCGTG 44105 Query 59794 CGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852 | || |||| | ||| ||| | ||| ||| ||||| |||| ||| ||| | Sbjct 44104 CCTTTTACGGATTTCAAATCGCG-ATTGAGAATATTCACTCTGAGATGTATAGTCTCCTT 44046 Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912 |||||| | |||| ||| |||||| | | ||| ||||| || || || || Sbjct 44045 CTCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCAATTGAAACC 43986 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA 59972 || || | | |||||| ||||||| ||| | ||||| | | ||| | ||| Sbjct 43985 ATTCCTTGTGTAACGAAGAAAGCACAATGGGCGATGAAATGGATC-GAC--GGATC-TCA 43930 Query 59973 ----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 || || |||| || | |||||||| ||||| ||||| ||||||||||| || Sbjct 43929 AAGCTTCGCTGAACGAATCGTGGCTTTTGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAG 43870 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 || ||| ||||||||||| | || || || || | ||||| || || | ||||||||| Sbjct 43869 CTTTTGTTCTATTTTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTTACTTTCTCCAA 43810 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||| ||||| || | ||||| || || ||| Sbjct 43809 CGAACTGATCTCAAGAGACGAAGGTCTTCAT 43779 >seq144 Length=115930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 365/560 (65%), Gaps = 16/560 (3%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| | | |||| ||||||||||||| | || |||||| Sbjct 55526 TTTCCGATTCACTACCCACAGATCTGGGAGATGTATAAGAAAGCCGAAGCATCGTTCTGG 55585 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAG-GATTGGGACAAGCTCAATTACGA 59680 ||| ||| || | || || | |||| || | |||||||| || || || ||| Sbjct 55586 ACCGCCGAAGAAGTCGATCTATCACAAGACG-GACGCGATTGGGAGAATCTAAACGACGG 55644 Query 59681 CGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGAT 59740 || | || |||||||| ||||| || |||||||| || || || || || | Sbjct 55645 TGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCAGACGGTATCGTTTT 55704 Query 59741 GGAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 || ||| | | || || | || ||||| || | | ||||| || | ||| Sbjct 55705 AGAGAATCTCGCTTCACGATTCATGTCA--GATGTTCAAGTCTCGGAGGCGCGTGCTTTC 55762 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | ||| ||| | ||| ||| || ||||||| ||| ||| | |||| Sbjct 55763 TACGGATTCCAGATCGCG-ATTGAGAATATTCATTCCGAGATGTATAGTCTCCTTCTCGA 55821 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 || || |||| ||| |||||| | | ||| ||||| || || || || | || Sbjct 55822 TACGTACATCAAAGATAACAAAGAGAGAGATCATCTCTTCCGCGCGATTGAAACCATTCC 55881 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC---ATCAT 59973 || || | |||||| | ||||| ||| ||||| | | ||| | | | | Sbjct 55882 TTGC-GTCGCGAAGAAAGCACAGTGGGCGATGACTTGGATC-GAC--GGATCTCAAACCT 55937 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | || |||| || ||||||| || ||||| ||||| ||||||||||| || |||| Sbjct 55938 TCGCTGAACGAATCGTAGCTTTCGCTTGCGTTGAAGGTATCTTCTTCTCCGGTAGCTTCT 55997 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | | || |||||||| || || || || |||||||| || | | ||||| ||||| Sbjct 55998 GCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGTTTAACCTTCTCTAACGAAT 56057 Query 60094 TGATTTCCCGGGACGAGGGC 60113 |||| || || ||||| ||| Sbjct 56058 TGATCTCTCGAGACGAAGGC 56077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548471250266400